Browse Element(s) Details


Os.46725.1.S1_at

Description gb:CB620435
DB_XREF= gi:29615423
DB_XREF=OSIIEa05K10.r
CLONE=OSIIEa05K10
TID=Os.46725.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46725 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0029P06.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g051309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05069Os.46726.1.S1_x_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.6803.1.S1_at11/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.57362.1.S1_at2/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05069Os.384.1.S1_at1/1110+2461357..2473925glycosyl hydrolase family 38 protein, putative, expressed
LOC_Os10g05088Os.46452.1.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.3.S1_x_at11/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05088Os.46452.2.S1_x_at10/1110+2476736..2481012GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os10g05110NANA10+2481497..2481769hypothetical protein
LOC_Os10g05120NANA10+2484961..2485675hypothetical protein
LOC_Os10g05130Os.46725.1.S1_at9/1110+2491190..2492532expressed protein
LOC_Os10g05140NANA10+2493665..2494056hypothetical protein
LOC_Os10g05150OsAffx.30289.1.S1_at11/1110+2495127..2495342hypothetical protein
LOC_Os10g05160OsAffx.20753.1.S1_at11/1110+2502113..2504631Protein kinase domain containing protein
LOC_Os10g05170OsAffx.30290.1.S1_at11/1110+2508119..2508601serine threonine kinase, putative
LOC_Os10g05180Os.46724.1.S1_at9/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05180OsAffx.18166.1.S1_at2/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05190Os.47463.1.S1_x_at6/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.52305.2.S1_x_at5/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.14491.2.S1_x_at4/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190OsAffx.5780.1.A1_at3/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46725.1.S1_at--978--9251Chr10:2492077..2492101 (25 bp)
TCCTGCGCCGTGTAGAACGCCGTCG
LOC_Os10g05130
Os.46725.1.S1_at--1028--6111Chr10:2492104..2492128 (25 bp)
GAGGGAAGGACGTCCACGCCGGCGT
LOC_Os10g05130
Os.46725.1.S1_at--971--4451Chr10:2492149..2492173 (25 bp)
GCCTCATTCGCACCGATATTTATGC
LOC_Os10g05130
Os.46725.1.S1_at--713--10111Chr10:2492169..2492193 (25 bp)
TATGCATGCGAGATTTGCCGGCGGT
LOC_Os10g05130
Os.46725.1.S1_at--1153--7711Chr10:2492191..2492215 (25 bp)
GGTGGTGGTTTTTACTATTATTCAT
LOC_Os10g05130
Os.46725.1.S1_at--484--6811Chr10:2492216..2492240 (25 bp)
GTTTTTAATTTCTGGTGTCTCTCTA
LOC_Os10g05130
Os.46725.1.S1_at--193--3891Chr10:2492227..2492251 (25 bp)
CTGGTGTCTCTCTATTTTTCCATTT
LOC_Os10g05130
Os.46725.1.S1_at--890--6192Chr10:2492350..2492576 (25 bp)
GAGGCAATTAAGTAAACCTATCTTG
NONE
Os.46725.1.S1_at--194--1751NONE
ACCTATCTTGGTAATGGCTAAGGCC
NONE
Os.46725.1.S1_at--7--7831Chr10:2492374..2492398 (25 bp)
GGTAATGGCTAAGGCCTAAGGCTAA
LOC_Os10g05130
Os.46725.1.S1_at--4--8851Chr10:2492390..2492414 (25 bp)
TAAGGCTAATTAAGGGTTTACATAG
LOC_Os10g05130
Target Sequence 
TCCTGCGCCGTGTAGAACGCCGTCGGCGAGGGAAGGACGTCCACGCCGGCGTTGACCGCCGCCGCCGCCGCCTCATTCGC
ACCGATATTTATGCATGCGAGATTTGCCGGCGGTGGTGGTTTTTACTATTATTCATGTTTTTAATTTCTGGTGTCTCTCT
ATTTTTCCATTTCTTTCTCCAAGACTTTTTTTTCTTTGGATGGAAGAAATGGTGAAAAAAAAAAGTGTGTATTTTTTCTT
GAATTTATTTTCTATCATTTTGAGGGGTTGTGAGGCAATTAAGTAAACCTATCTTGGTAATGGCTAAGGCCTAAGGCTAA
TTAAGGGTTTACATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis