Browse Element(s) Details


OsAffx.524.1.S1_at

Description gb:XM_354181.1
DB_XREF= gi:35189795
TID=OsAffx.524.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g365501/11hAT family dimerisation domain containing protein
LOC_Os07g317801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36530Os.56169.1.S1_at11/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36530Os.51655.2.S1_x_at1/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36534Os.51372.1.S1_at11/113+20199243..20199812expressed protein
LOC_Os03g36540Os.22677.2.S1_at11/113+20202305..20204631Magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed
LOC_Os03g36550Os.23305.1.A1_x_at5/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550Os.23305.1.A1_at4/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550OsAffx.524.1.S1_at1/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36560Os.13392.1.S1_at11/113+20218755..20224247Peroxidase 27 precursor, putative, expressed
LOC_Os03g36560OsAffx.25249.1.S1_at2/113+20218755..20224247Peroxidase 27 precursor, putative, expressed
LOC_Os03g36570OsAffx.5954.3.S1_x_at4/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.18275.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.5954.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.22699.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36580Os.31845.1.S1_x_at3/113+20239030..20241832hypothetical protein
LOC_Os03g36580Os.31845.1.S1_at3/113+20239030..20241832hypothetical protein
LOC_Os03g36580OsAffx.3761.1.S1_x_at1/113+20239030..20241832hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.524.1.S1_at--876--9211Chr07:7058859..7058883 (25 bp)
TCCACATCCGACCTCTCTGTTTTTT
NONE
OsAffx.524.1.S1_at--623--9891Chr07:7058834..7058858 (25 bp)
TACTTCAAATGTAACACCGTCACCA
NONE
OsAffx.524.1.S1_at--386--2171NONE
ACACCGTCACCAATCGAGCAAAATT
NONE
OsAffx.524.1.S1_at--121--7811Chr07:7055489..7055513 (25 bp)
GGTCGCATTATACCAGCCGCCAGCG
NONE
OsAffx.524.1.S1_at--1014--10111Chr07:7055460..7055484 (25 bp)
TATGTCTATTTTCGCTGATGGTCAC
NONE
OsAffx.524.1.S1_at--609--8873Chr01:25117284..25117304 (21 bp)
TGATGGTCACTTAGGTGCGCCGCCA
NONE
OsAffx.524.1.S1_at--659--2819Chr12:9861660..9861731 (25 bp)
AAGATAGATAATTTTCGCTGGCGGT
NONE
OsAffx.524.1.S1_at--1107--4131Chr07:7055402..7055426 (25 bp)
CGCTGGCGGTTGTGTCATACAGACC
NONE
OsAffx.524.1.S1_at--1132--2433Chr12:9861616..9861653 (24 bp)
AAAATGGATTTTCGCTGCCGGCCGT
NONE
OsAffx.524.1.S1_at--1034--40115Chr11:24050759..24050897 (25 bp)
CGTCTTAAGCCAACGCCAGCGAAAA
NONE
OsAffx.524.1.S1_at--1035--4374Chr07:13069097..13069121 (25 bp)
CCAACGCCAGCGAAAATGTATTTTT
NONE
Target Sequence 
TCCACATCCGACCTCTCTGTTTTTTTACTTCAAATGTAACACCGTCACCAATCGAGCAAAATTGTAACGAGGGGGTAAAG
GACACCGACCGCCAGCGAAAATGGATCTTCGCTGGCGGTCGCATTATACCAGCCGCCAGCGAAGATATGTCTATTTTCGC
TGATGGTCACTTAGGTGCGCCGCCAGCAAAGATAGATAATTTTCGCTGGCGGTTGTGTCATACAGACCGCTCCCCTCCCT
TCTCTCCCTCTCTCCTCCCTCTCTTCTCCACCGACGACGACGCGAGGCGGGTGCGCGGCGGCGACGCCGCCAGCGAAAAT
GGATTTTCGCTGCCGGCCGTCTTAAGCCAACGCCAGCGAAAATGTATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis