Browse Element(s) Details


OsAffx.24892.1.S1_x_at

Description tigr:9630.m05587
TID=OsAffx.24892.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5632011/11Glycogen synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56290OsAffx.29789.1.S1_x_at7/112+34447368..34451852hypothetical protein
LOC_Os02g56290OsAffx.29789.3.S1_x_at7/112+34447368..34451852hypothetical protein
LOC_Os02g56290OsAffx.31885.2.S1_x_at2/112+34447368..34451852hypothetical protein
LOC_Os02g56300Os.6404.1.S1_at11/112+34457164..34461142aminotransferase, classes I and II family protein, expressed
LOC_Os02g56310Os.53968.1.S1_at11/112+34462885..34465156Protein kinase domain containing protein, expressed
LOC_Os02g56320OsAffx.24892.1.S1_x_at11/112+34470061..34476909Glycogen synthase, putative, expressed
LOC_Os02g56330OsAffx.12662.1.S1_at3/112+34477416..34479901Calcium binding EGF domain containing protein, expressed
LOC_Os02g56340Os.53293.1.S1_at11/112+34482508..34483496expressed protein
LOC_Os02g56350OsAffx.12662.1.S1_at11/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_at1/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_x_at1/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56360Os.18659.1.S1_s_at11/112+34494718..34498687expressed protein
LOC_Os02g56360OsAffx.12663.1.S1_at11/112+34494718..34498687expressed protein
LOC_Os02g56360Os.51194.1.A1_x_at7/112+34494718..34498687expressed protein
LOC_Os02g56360OsAffx.11133.1.S1_at1/112+34494718..34498687expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010021biological_processamylopectin biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009011molecular_functionstarch synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24892.1.S1_x_at--937--5971Chr02:34471422..34471446 (25 bp)
GAGACTCTTTCTGCGTAAACCAGCA
LOC_Os02g56320
OsAffx.24892.1.S1_x_at--1045--5971Chr02:34471750..34471772 (23 bp)
GAGAAACCTCTACACGTTGTGCACA
LOC_Os02g56320
OsAffx.24892.1.S1_x_at--730--9911Chr02:34471825..34471849 (25 bp)
TACTGGATTATCTTCCGCACTTCAA
LOC_Os02g56320
OsAffx.24892.1.S1_x_at--280--8631Chr02:34471863..34471887 (25 bp)
TGGTGGAGGTCATACTGCCCAAGTA
LOC_Os02g56320
OsAffx.24892.1.S1_x_at--888--271Chr02:34472502..34472526 (25 bp)
ATAGAACCGGTGCAGCTGTCATATT
LOC_Os02g56320
OsAffx.24892.1.S1_x_at--143--531Chr02:34472600..34472624 (25 bp)
ATCGCGATATGTTACGTGGCTACCC
LOC_Os02g56320
OsAffx.24892.1.S1_x_at--964--9951Chr02:34472620..34472687 (25 bp)
TACCCCGATGACTTTGAGCGATTTT
LOC_Os02g56320
OsAffx.24892.1.S1_x_at--233--5871Chr02:34473024..34473044 (21 bp)
GAGCGATTTTCCTATTTTTCACGTG
LOC_Os02g56320
OsAffx.24892.1.S1_x_at--982--7551Chr02:34473122..34473146 (25 bp)
GGGCCTCTATTCTGGGATATATTTG
LOC_Os02g56320
OsAffx.24892.1.S1_x_at--670--6511Chr02:34473137..34473577 (25 bp)
GATATATTTGCTCACCAGGGACTTG
LOC_Os02g56320
OsAffx.24892.1.S1_x_at--680--3451Chr02:34473568..34473592 (25 bp)
CAGGGACTTGGGAACACTCGGATAT
LOC_Os02g56320
Target Sequence 
GAGACTCTTTCTGCGTAAACCAGCAGAGAAACCTCTACACGTTGTGCACATCTGCAGTGAAATGGATCCAATAACATCAC
GTGGATCATTAGCAACCTATGTTACTGGATTATCTTCCGCACTTCAAAGAAAGGGTAACTTGGTGGAGGTCATACTGCCC
AAGTATGCTGGCATAAATGAAGATGTAATTCATTTCCTGAGGAAAGCTGAAGCAGACTATGAATCTTATTATGGTGGTTG
TTGGCATAAAAACAGAATATGGACAGGTATATCAAGTGGTGTTAGTCTTACACTCATAGAACCGGTGCAGCTGTCATATT
TTGATCGCGATATGTTACGTGGCTACCCCGATGACTTTGAGCGATTTTCCTATTTTTCACGTGCATCATTGGATTATATT
GTAAAATCCGGAAAGCAGCCAGATGTTTTGCATGTACATAACTGGGAAACTGCTATAGTGGGGCCTCTATTCTGGGATAT
ATTTGCTCACCAGGGACTTGGGAACACTCGGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24892.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis