Browse Element(s) Details


Os.6404.1.S1_at

Description gb:AK105851.1
DB_XREF= gi:32991060
TID=Os.6404.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.6404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G09, full insert sequence.
FL= gb:AK073935.1 gb:AK105851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5630011/11aminotransferase, classes I and II family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56280Os.23255.1.A1_at10/112+34433899..34438686zinc finger family protein, putative, expressed
LOC_Os02g56290OsAffx.29789.1.S1_x_at7/112+34447368..34451852hypothetical protein
LOC_Os02g56290OsAffx.29789.3.S1_x_at7/112+34447368..34451852hypothetical protein
LOC_Os02g56290OsAffx.31885.2.S1_x_at2/112+34447368..34451852hypothetical protein
LOC_Os02g56300Os.6404.1.S1_at11/112+34457164..34461142aminotransferase, classes I and II family protein, expressed
LOC_Os02g56310Os.53968.1.S1_at11/112+34462885..34465156Protein kinase domain containing protein, expressed
LOC_Os02g56320OsAffx.24892.1.S1_x_at11/112+34470061..34476909Glycogen synthase, putative, expressed
LOC_Os02g56330OsAffx.12662.1.S1_at3/112+34477416..34479901Calcium binding EGF domain containing protein, expressed
LOC_Os02g56340Os.53293.1.S1_at11/112+34482508..34483496expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0030148biological_processsphingolipid biosynthesis
GO:0046512biological_processsphingosine biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0016020cellular_componentmembrane
GO:0004758molecular_functionserine C-palmitoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6404.1.S1_at--137--4271Chr02:34460688..34460712 (25 bp)
CCTGGAGCTCCTTGAGGTTATTTCA
LOC_Os02g56300
Os.6404.1.S1_at--102--7151Chr02:34460835..34460859 (25 bp)
GTCTTCATTGCAGCGACGAAACGAT
LOC_Os02g56300
Os.6404.1.S1_at--1046--9271Chr02:34460882..34460906 (25 bp)
TCCGGTTGGAATCCGCCTATTCGTA
LOC_Os02g56300
Os.6404.1.S1_at--616--10131Chr02:34460930..34460954 (25 bp)
TATCCTCAAAGTATCTGAATCCCTG
LOC_Os02g56300
Os.6404.1.S1_at--946--3391Chr02:34460965..34460989 (25 bp)
CAGCATCAGTGCTCTAGTGACAAAC
LOC_Os02g56300
Os.6404.1.S1_at--468--2371Chr02:34460986..34461010 (25 bp)
AAACTGACAACCTTGCATCTGGCAT
LOC_Os02g56300
Os.6404.1.S1_at--880--8271Chr02:34461006..34461030 (25 bp)
GGCATGATGTGTTCTACAGTTACGT
LOC_Os02g56300
Os.6404.1.S1_at--231--6671Chr02:34461024..34461048 (25 bp)
GTTACGTACAAATCTGTATGCTCGT
LOC_Os02g56300
Os.6404.1.S1_at--738--6911Chr02:34461039..34461063 (25 bp)
GTATGCTCGTTGATCTGGCTCAATT
LOC_Os02g56300
Os.6404.1.S1_at--882--8311Chr02:34461055..34461079 (25 bp)
GGCTCAATTTGCTGTCGTGTCTAGC
LOC_Os02g56300
Os.6404.1.S1_at--434--4731Chr02:34461065..34461089 (25 bp)
GCTGTCGTGTCTAGCAGAATTACAA
LOC_Os02g56300
Target Sequence 
CCTGGAGCTCCTTGAGGTTATTTCAGAGAAGGTATTGAAGGAAGATTCAGTCTTCATTGCAGCGACGAAACGATCGAGTT
TGGACAAGTGTCGTCTTCCGGTTGGAATCCGCCTATTCGTATCAGCTGGTCACACTGAATCTGATATCCTCAAAGTATCT
GAATCCCTGAAAAGGGTTGCAGCATCAGTGCTCTAGTGACAAACTGACAACCTTGCATCTGGCATGATGTGTTCTACAGT
TACGTACAAATCTGTATGCTCGTTGATCTGGCTCAATTTGCTGTCGTGTCTAGCAGAATTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis