Browse Element(s) Details


Os.53968.1.S1_at

Description gb:AK101080.1
DB_XREF= gi:32986289
TID=Os.53968.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024D05, full insert sequence.
FL= gb:AK101080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5631011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56280Os.23255.1.A1_at10/112+34433899..34438686zinc finger family protein, putative, expressed
LOC_Os02g56290OsAffx.29789.1.S1_x_at7/112+34447368..34451852hypothetical protein
LOC_Os02g56290OsAffx.29789.3.S1_x_at7/112+34447368..34451852hypothetical protein
LOC_Os02g56290OsAffx.31885.2.S1_x_at2/112+34447368..34451852hypothetical protein
LOC_Os02g56300Os.6404.1.S1_at11/112+34457164..34461142aminotransferase, classes I and II family protein, expressed
LOC_Os02g56310Os.53968.1.S1_at11/112+34462885..34465156Protein kinase domain containing protein, expressed
LOC_Os02g56320OsAffx.24892.1.S1_x_at11/112+34470061..34476909Glycogen synthase, putative, expressed
LOC_Os02g56330OsAffx.12662.1.S1_at3/112+34477416..34479901Calcium binding EGF domain containing protein, expressed
LOC_Os02g56340Os.53293.1.S1_at11/112+34482508..34483496expressed protein
LOC_Os02g56350OsAffx.12662.1.S1_at11/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_at1/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_x_at1/112+34486691..34492248hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0004611molecular_functionphosphoenolpyruvate carboxykinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53968.1.S1_at--1049--8851Chr02:34463469..34463493 (25 bp)
TGATGCGCCGCATGCTCTGCAAGGA
LOC_Os02g56310
Os.53968.1.S1_at--531--3211Chr02:34463450..34463474 (25 bp)
CAAGGACGTCTCCAGAAGGTTCTCC
LOC_Os02g56310
Os.53968.1.S1_at--751--6191Chr02:34463289..34463311 (23 bp)
GAGGCATCCTTGGATCGTGAGCCGT
LOC_Os02g56310
Os.53968.1.S1_at--613--7391Chr02:34463252..34463276 (25 bp)
GTGATGGGCTAGTTCGTTCGATCGA
LOC_Os02g56310
Os.53968.1.S1_at--1153--6311Chr02:34463220..34463244 (25 bp)
GATGAACTCCATCCATGTGTAGATA
LOC_Os02g56310
Os.53968.1.S1_at--203--6951Chr02:34463202..34463226 (25 bp)
GTAGATAGCTTTTCTTCAGGCGAAG
LOC_Os02g56310
Os.53968.1.S1_at--279--5311Chr02:34463181..34463205 (25 bp)
GAAGGACTCGTCTGCTAGCTGTGAA
LOC_Os02g56310
Os.53968.1.S1_at--1036--7631Chr02:34463049..34463073 (25 bp)
GGGAGCTAGCTATATCTTTCTACCC
LOC_Os02g56310
Os.53968.1.S1_at--498--10291Chr02:34463033..34463057 (25 bp)
TTTCTACCCGAGTTTGTCCGATGTA
LOC_Os02g56310
Os.53968.1.S1_at--1103--1051Chr02:34462965..34462989 (25 bp)
AGGGTAGTCTCTCTTAGTGCGTAGC
LOC_Os02g56310
Os.53968.1.S1_at--368--5211Chr02:34462891..34462915 (25 bp)
GAATTGCTGCAGTTCACCTATGCAT
LOC_Os02g56310
Target Sequence 
TGATGCGCCGCATGCTCTGCAAGGACGTCTCCAGAAGGTTCTCCGCCGACCAAGTCCTGAGGCATCCTTGGATCGTGAGC
CGTGGGGGAGCCGCGGTGATGGGCTAGTTCGTTCGATCGAGGATGATGATGAACTCCATCCATGTGTAGATAGCTTTTCT
TCAGGCGAAGGACTCGTCTGCTAGCTGTGAATTTTGGCTTGGATTAGTGGCAGGGTTCAGTGGTAGTAGCGTATTATTAG
TGTTTGTGTCCAGTAGGAGTTAGGACCATGACGAGCTCTGGTGAATTGGCTGGAATTTGGGAGCTAGCTATATCTTTCTA
CCCGAGTTTGTCCGATGTACATACAGTGATCAGTTGATCACCTTTTGGCTGAACTGAAGAAGAGGGTAGTCTCTCTTAGT
GCGTAGCAGGCTTGTTCAGATGAAAATTGAATCCAAAAACATGAGAAAATTTCTGTGAATTGCTGCAGTTCACCTATGCA
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis