Browse Element(s) Details


Os.23255.1.A1_at

Description gb:AK072167.1
DB_XREF= gi:32982190
TID=Os.23255.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130C12, full insert sequence.
FL= gb:AK072167.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5628010/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56260OsAffx.31643.1.S1_at11/112+34416285..34419534hypothetical protein
LOC_Os02g56270Os.15975.1.S1_a_at11/112+34422789..34428292ENTH domain containing protein, expressed
LOC_Os02g56280Os.23255.1.A1_at10/112+34433899..34438686zinc finger family protein, putative, expressed
LOC_Os02g56290OsAffx.29789.1.S1_x_at7/112+34447368..34451852hypothetical protein
LOC_Os02g56290OsAffx.29789.3.S1_x_at7/112+34447368..34451852hypothetical protein
LOC_Os02g56290OsAffx.31885.2.S1_x_at2/112+34447368..34451852hypothetical protein
LOC_Os02g56300Os.6404.1.S1_at11/112+34457164..34461142aminotransferase, classes I and II family protein, expressed
LOC_Os02g56310Os.53968.1.S1_at11/112+34462885..34465156Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23255.1.A1_at--1104--3731Chr02:34434474..34434498 (25 bp)
CTAATCCAGGCCTACCAGACTTCAT
LOC_Os02g56280
Os.23255.1.A1_at--46--9751Chr02:34434473..34434497 (25 bp)
TAATCCAGGCCTACCAGACTTCATC
LOC_Os02g56280
Os.23255.1.A1_at--938--7991Chr02:34434313..34434337 (25 bp)
GGATGGGTTTTGCTAAAGCCTAGAT
LOC_Os02g56280
Os.23255.1.A1_at--989--7671Chr02:34434309..34434333 (25 bp)
GGGTTTTGCTAAAGCCTAGATGTGA
LOC_Os02g56280
Os.23255.1.A1_at--251--10271Chr02:34434305..34434329 (25 bp)
TTTGCTAAAGCCTAGATGTGAATTT
LOC_Os02g56280
Os.23255.1.A1_at--1105--4831Chr02:34434302..34434326 (25 bp)
GCTAAAGCCTAGATGTGAATTTGGT
LOC_Os02g56280
Os.23255.1.A1_at--552--9831Chr02:34434300..34434324 (25 bp)
TAAAGCCTAGATGTGAATTTGGTGA
LOC_Os02g56280
Os.23255.1.A1_at--1135--3111Chr02:34434285..34434309 (25 bp)
AATTTGGTGAAAGTAGTAGTGTCAG
LOC_Os02g56280
Os.23255.1.A1_at--438--1191Chr02:34434271..34434295 (25 bp)
AGTAGTGTCAGTTGAATTCTTGGTT
LOC_Os02g56280
Os.23255.1.A1_at--671--4451Chr02:34433913..34433937 (25 bp)
GCCTCTTCCTGGAAATTGAAAATTC
LOC_Os02g56280
Os.23255.1.A1_at--118--51Chr02:34433899..34433923 (25 bp)
ATTGAAAATTCTGATCATGGCCTCT
NONE
Target Sequence 
CTAATCCAGGCCTACCAGACTTCATCCATGGTCGACATGCTGCTGCGCTCGCANACAATGAGCCGCTCCTCAACCCCTCN
ACAGATGAGGCATGTGAAGTCGTTTCCAGCGCGCCCGCAGCCTAGGTAACTGCAATTTCTAGTGTTNGGCAACGCCAATA
AGGATGGGTTTTGCTAAAGCCTAGATGTGAATTTGGTGAAAGTAGTAGTGTCAGTTGAATTCTTGGTTTTGTGGCGGGAG
GACGGGACGGGGGTATAGTTTGTGTGGTATAAGGGGGATTTTAACGGTGTAAATTAATTTGGGTGTGGTGGGGGTAAAAG
GGAAAAAGAATCTGTATTTGGGAGAAGGATGGTATAAGAGTTGGGGAAATGGGGTAAGATAGGGTGGCTATTATNTTTTT
TTTCNTTCTTGTTGGTTACCTGGTATACTCCCAGTATTGTACTAGTAGCTCTCCTCTCTCCTTTGTGTGGNGATGTACAT
AAAGAGAAGGGTATACATTTGTGAACTGGAATGTGGTTGAGGATGGGGATGGATACCTAATCCNTTTGCAAGGCTTGGCT
TGCCTCTTCCTGGAAATTGAAAATTCTGATCATGGCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23255.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis