Browse Element(s) Details


OsAffx.31643.1.S1_at

Description tigr:9630.m05581
TID=OsAffx.31643.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glycosyl transferase, group 2 family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5626011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56250Os.16248.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250Os.49555.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250OsAffx.24890.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250Os.16248.2.S1_x_at10/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56260OsAffx.31643.1.S1_at11/112+34416285..34419534hypothetical protein
LOC_Os02g56270Os.15975.1.S1_a_at11/112+34422789..34428292ENTH domain containing protein, expressed
LOC_Os02g56280Os.23255.1.A1_at10/112+34433899..34438686zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31643.1.S1_at--1000--1491Chr02:34416748..34416772 (25 bp)
AGCACTGGCGCGAGTTCTACGCGTA
LOC_Os02g56260
OsAffx.31643.1.S1_at--375--6071Chr02:34416737..34416761 (25 bp)
GAGTTCTACGCGTACATGGCGGCGA
LOC_Os02g56260
OsAffx.31643.1.S1_at--678--3491Chr02:34416723..34416747 (25 bp)
CATGGCGGCGAGGTTCACCGAGGAT
LOC_Os02g56260
OsAffx.31643.1.S1_at--39--9211Chr02:34416699..34416723 (25 bp)
TGCCAAGCAGAATCCAGTTCAGATA
LOC_Os02g56260
OsAffx.31643.1.S1_at--149--5271Chr02:34416690..34416714 (25 bp)
GAATCCAGTTCAGATACCTCGGTCC
LOC_Os02g56260
OsAffx.31643.1.S1_at--854--1251Chr02:34416679..34416703 (25 bp)
AGATACCTCGGTCCCGCACCAATGG
LOC_Os02g56260
OsAffx.31643.1.S1_at--911--8111Chr02:34416648..34416672 (25 bp)
GGCGTCTTGGAAGAAGTTCCTCATC
LOC_Os02g56260
OsAffx.31643.1.S1_at--383--531Chr02:34416626..34416650 (25 bp)
ATCGACATGATGTACCTGCGTGGCT
LOC_Os02g56260
OsAffx.31643.1.S1_at--870--6271Chr02:34416618..34416642 (25 bp)
GATGTACCTGCGTGGCTACGTCGCG
LOC_Os02g56260
OsAffx.31643.1.S1_at--832--2211Chr02:34416499..34416523 (25 bp)
ACAAGAGGGACTTCGAGGTGCCGCT
LOC_Os02g56260
OsAffx.31643.1.S1_at--840--4251Chr02:34416389..34416413 (25 bp)
CCGGTCTCCTTCAAGGCGCTCAAGG
LOC_Os02g56260
Target Sequence 
AGCACTGGCGCGAGTTCTACGCGTACATGGCGGCGAGGTTCACCGAGGATGCCAAGCAGAATCCAGTTCAGATACCTCGG
TCCCGCACCAATGGCTGGCAGGCGTCTTGGAAGAAGTTCCTCATCGACATGATGTACCTGCGTGGCTACGTCGCGCTCTA
CCCGAACTTCCCCGACCAGAGCAGCTTCTCCACCAACCACATGGAGCCCGGCGCGCACATCAGCGCCAAGGGCAACGTCG
TCAAGCACGACAAGAGGGACTTCGAGGTGCCGCTCGTCGCCGACGACTTCTCGCCGCTGCTCCCCGCCGGGAGGATGCCG
CCGGCGTCCAAGCTCCCCGTGCTCAACCTCTTCAACCAGCCGGTCTCCTTCAAGGCGCTCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis