Browse Element(s) Details


OsAffx.24890.1.S1_at

Description tigr:9630.m05580
TID=OsAffx.24890.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GATA zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5625011/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56220OsAffx.24889.1.S1_at11/112+34382063..34383695expressed protein
LOC_Os02g56229NANA2+34385019..34386372NA
LOC_Os02g56240NANA2+34388001..34388696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56250Os.16248.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250Os.49555.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250OsAffx.24890.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250Os.16248.2.S1_x_at10/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56260OsAffx.31643.1.S1_at11/112+34416285..34419534hypothetical protein
LOC_Os02g56270Os.15975.1.S1_a_at11/112+34422789..34428292ENTH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24890.1.S1_at--1028--8351Chr02:34406346..34406370 (25 bp)
GGCGGTGCACGCATTGCCAGATCGA
LOC_Os02g56250
OsAffx.24890.1.S1_at--1063--4671Chr02:34406347..34406371 (25 bp)
GCGGTGCACGCATTGCCAGATCGAG
LOC_Os02g56250
OsAffx.24890.1.S1_at--890--7771Chr02:34406349..34406373 (25 bp)
GGTGCACGCATTGCCAGATCGAGAA
LOC_Os02g56250
OsAffx.24890.1.S1_at--634--9031Chr02:34406351..34406375 (25 bp)
TGCACGCATTGCCAGATCGAGAAGA
LOC_Os02g56250
OsAffx.24890.1.S1_at--464--5091Chr02:34406352..34406376 (25 bp)
GCACGCATTGCCAGATCGAGAAGAC
LOC_Os02g56250
OsAffx.24890.1.S1_at--27--1851Chr02:34406354..34406378 (25 bp)
ACGCATTGCCAGATCGAGAAGACGC
LOC_Os02g56250
OsAffx.24890.1.S1_at--136--10551Chr02:34406489..34406513 (25 bp)
TTCATGCCGTCCATCCATTCCAACT
LOC_Os02g56250
OsAffx.24890.1.S1_at--710--4371Chr02:34406508..34406532 (25 bp)
CCAACTCCCACAAGAAGGTGGTGGA
LOC_Os02g56250
OsAffx.24890.1.S1_at--168--8531Chr02:34406529..34406553 (25 bp)
TGGAGATGCGCCAGAAGGCAACCCG
LOC_Os02g56250
OsAffx.24890.1.S1_at--803--1291Chr02:34406532..34406556 (25 bp)
AGATGCGCCAGAAGGCAACCCGGAC
LOC_Os02g56250
OsAffx.24890.1.S1_at--37--4351Chr02:34406538..34406562 (25 bp)
GCCAGAAGGCAACCCGGACCGCCGA
LOC_Os02g56250
Target Sequence 
GGCGGTGCACGCATTGCCAGATCGAGAAGACGCCGCAGTGGCGCGCGGGCCCGCTCGGCCCCAAGACGCTCTGCAACGCG
TGCGGCGTCCGCTACAAGTCCGGCCGCCTCTTCCCGGAGTACCGCCCGGCGGCGAGCCCCACCTTCATGCCGTCCATCCA
TTCCAACTCCCACAAGAAGGTGGTGGAGATGCGCCAGAAGGCAACCCGGACCGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis