Browse Element(s) Details


Os.16248.2.S1_x_at

Description gb:AK107867.1
DB_XREF= gi:32993076
TID=Os.16248.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-C03, full insert sequence.
FL= gb:AK107867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5625010/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56220OsAffx.24889.1.S1_at11/112+34382063..34383695expressed protein
LOC_Os02g56229NANA2+34385019..34386372NA
LOC_Os02g56240NANA2+34388001..34388696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56250Os.16248.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250Os.49555.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250OsAffx.24890.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250Os.16248.2.S1_x_at10/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56260OsAffx.31643.1.S1_at11/112+34416285..34419534hypothetical protein
LOC_Os02g56270Os.15975.1.S1_a_at11/112+34422789..34428292ENTH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16248.2.S1_x_at--652--4231Chr02:34405002..34405026 (25 bp)
CCGAGGTGTTCGACCGCAAGGACGC
LOC_Os02g56250
Os.16248.2.S1_x_at--177--2911Chr02:34405019..34405039 (21 bp)
AAGGACGCCCACATTGGCCCGTGTG
LOC_Os02g56250
Os.16248.2.S1_x_at--415--10871NONE
TTGGCCCGTGTGATGAGCTGGACAT
NONE
Os.16248.2.S1_x_at--740--7571Chr02:34405736..34405760 (25 bp)
GGGCTGTTCGACGATGGAACCATCC
LOC_Os02g56250
Os.16248.2.S1_x_at--622--5851Chr02:34405766..34405790 (25 bp)
GAGCCGAGTTTTCCGGGCGTCAACT
LOC_Os02g56250
Os.16248.2.S1_x_at--687--6171Chr02:34405856..34405880 (25 bp)
GAGGAGGCGCTGTTCCGCAGCTCCA
LOC_Os02g56250
Os.16248.2.S1_x_at--228--7311Chr02:34405892..34405916 (25 bp)
GTGCTGGAGCACAGCGGCTTCAACG
LOC_Os02g56250
Os.16248.2.S1_x_at--90--1631Chr02:34405904..34405928 (25 bp)
AGCGGCTTCAACGTGGCAACCAATG
LOC_Os02g56250
Os.16248.2.S1_x_at--293--4571Chr02:34406051..34406075 (25 bp)
GCGCGCGCGCGCAGCAAACGGTCTA
LOC_Os02g56250
Os.16248.2.S1_x_at--271--1491Chr02:34406063..34406087 (25 bp)
AGCAAACGGTCTAGGCCGTCCGCGT
LOC_Os02g56250
Os.16248.2.S1_x_at--895--8592Chr02:34406133..34406157 (25 bp)
TGGTGCCGACGCCAATGTACTCGTC
LOC_Os02g56250
Target Sequence 
CCGAGGTGTTCGACCGCAAGGACGCCCACATTGGCCCGTGTGATGAGCTGGACATGGACATGGCGCAGCTGGAGTGGCTG
TCGGGGCTGTTCGACGATGGAACCATCCCGCACGAGCCGAGTTTTCCGGGCGTCAACTGCGCGGCGCCGATCAAGGCGTC
GGCGCTGACGGCGAACGCCGGCGTCGTGCTGCCGGACAAGGCGGAGGAGGCGCTGTTCCGCAGCTCCAGCCCCATCTCCG
TGCTGGAGCACAGCGGCTTCAACGTGGCAACCAATGGGGGCTCCTCCTCGTCGTCCTCCTCGTCGGCGTCCTCCTCGTCG
GAGTCGTTCTCCGGCAGCGGCCGCGCGTGGTCCGCGCCCGTGTCGCCGCGCCCGGAGCCGCCCGTGCTCGTCATCCCGGC
GCGCGCGCGCAGCAAACGGTCTAGGCCGTCCGCGTTCCCGGCTGTCCGCGGCGCGCCGGCGGCGACGGAGACCACCATCC
TGGTGCCGACGCCAATGTACTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16248.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis