Browse Element(s) Details


OsAffx.24889.1.S1_at

Description tigr:9630.m05577
TID=OsAffx.24889.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5622011/11expressed protein
LOC_Os12g365701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56170Os.16927.1.S1_at11/112+34356751..34359519PAP-specific phosphatase, putative, expressed
LOC_Os02g56180Os.23823.1.S1_at11/112+34361610..34363856oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g56190Os.53634.1.S1_at10/112+34364278..34366180expressed protein
LOC_Os02g56200OsAffx.12660.1.S1_x_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56200Os.5138.1.A1_a_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56210Os.8453.2.S1_at11/112+34372830..34376223Dcp2, box A domain containing protein, expressed
LOC_Os02g56220OsAffx.24889.1.S1_at11/112+34382063..34383695expressed protein
LOC_Os02g56229NANA2+34385019..34386372NA
LOC_Os02g56240NANA2+34388001..34388696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56250Os.16248.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250Os.49555.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250OsAffx.24890.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250Os.16248.2.S1_x_at10/112+34402392..34407536GATA zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24889.1.S1_at--988--6871Chr02:34383630..34383654 (25 bp)
GTATATACTACTGCTACACAAAGTC
LOC_Os02g56220
OsAffx.24889.1.S1_at--104--2251Chr02:34383583..34383607 (25 bp)
AAATTATTTCTTCAGTAGCAGCAGC
LOC_Os02g56220
OsAffx.24889.1.S1_at--189--2411Chr02:34383555..34383579 (25 bp)
AAACAGCTCATCAGGTGTTGGTGAT
LOC_Os02g56220
OsAffx.24889.1.S1_at--1025--6611Chr02:34383539..34383563 (25 bp)
GTTGGTGATACCTATGTTCCGGGCA
LOC_Os02g56220
OsAffx.24889.1.S1_at--113--3131Chr02:34382657..34382681 (25 bp)
AATTTCCTCAATGAGATCAGCACAG
LOC_Os02g56220
OsAffx.24889.1.S1_at--946--392Chr12:22358931..22358955 (25 bp)
ATCAGCACAGCAGGCTCAACCAAAG
LOC_Os12g36570
OsAffx.24889.1.S1_at--865--711Chr02:34382602..34382626 (25 bp)
ATGATCCAACAACCATACAGTTCAG
LOC_Os02g56220
OsAffx.24889.1.S1_at--809--7691Chr02:34382325..34382595 (25 bp)
GGGTAACCAGATCCATGATACAGAC
LOC_Os02g56220
OsAffx.24889.1.S1_at--786--4251Chr02:34382285..34382309 (25 bp)
CCGGCACAATGAAACCACAGCACTT
LOC_Os02g56220
OsAffx.24889.1.S1_at--790--3291Chr02:34382270..34382294 (25 bp)
CACAGCACTTCCTTCTGAATATCTG
LOC_Os02g56220
OsAffx.24889.1.S1_at--492--4851Chr02:34382103..34382127 (25 bp)
GCTACTTCTCAGGAGCTCTGAGTGA
LOC_Os02g56220
Target Sequence 
GTATATACTACTGCTACACAAAGTCACAAAACTACACCGAATAAATCAAATTATTTCTTCAGTAGCAGCAGCAGCAAACA
GCTCATCAGGTGTTGGTGATACCTATGTTCCGGGCACCGATGCGGCCGTCGGCCACCGACACGGCGACTCCACCGGCTGC
AGCCGGTGTCCGGCACCGGCGATCGCCGCTTCCATCCAATCCAACTATCTCCCAGTCCTCCTCACCCCACACCATCCACT
CAACAACAGCAAAAATCTTTTTTCAATTTCCTCAATGAGATCAGCACAGCAGGCTCAACCAAAGAAACAATTATCAGCAA
TGATCCAACAACCATACAGTTCAGAAAAGGGGGTAACCAGATCCATGATACAGACCAGTGGAAATATGAACCGGCACAAT
GAAACCACAGCACTTCCTTCTGAATATCTGATATCTTCAGGCTACTTCTCAGGAGCTCTGAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis