Browse Element(s) Details


OsAffx.12660.1.S1_x_at

Description tigr:9630.m05576
TID=OsAffx.12660.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Dcp2, box A domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5620011/11ABC1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56120Os.23256.1.S1_at11/112+34342713..34343974AUX/IAA family protein, expressed
LOC_Os02g56130Os.3376.1.S1_at7/112+34345538..34347678Proliferating cell nuclear antigen, putative, expressed
LOC_Os02g56140OsAffx.3088.1.S1_at11/112+34348190..34350918Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g56150Os.20495.1.S1_x_at11/112+34352419..34354559expressed protein
LOC_Os02g56150Os.20495.1.S1_at11/112+34352419..34354559expressed protein
LOC_Os02g56160OsAffx.12659.1.S1_at11/112+34355335..34356540Kelch motif family protein
LOC_Os02g56170Os.16927.1.S1_at11/112+34356751..34359519PAP-specific phosphatase, putative, expressed
LOC_Os02g56180Os.23823.1.S1_at11/112+34361610..34363856oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g56190Os.53634.1.S1_at10/112+34364278..34366180expressed protein
LOC_Os02g56200OsAffx.12660.1.S1_x_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56200Os.5138.1.A1_a_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56210Os.8453.2.S1_at11/112+34372830..34376223Dcp2, box A domain containing protein, expressed
LOC_Os02g56220OsAffx.24889.1.S1_at11/112+34382063..34383695expressed protein
LOC_Os02g56229NANA2+34385019..34386372NA
LOC_Os02g56240NANA2+34388001..34388696retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12660.1.S1_x_at--278--2271Chr02:34367395..34367419 (25 bp)
AAATCTGTGCTTGCGGCTTTTACTA
LOC_Os02g56200
OsAffx.12660.1.S1_x_at--901--1631Chr02:34367208..34367229 (22 bp)
AGCGAACGCGAAGTCACTTGCTCGT
LOC_Os02g56200
OsAffx.12660.1.S1_x_at--942--9091Chr02:34367190..34367214 (25 bp)
TGCTCGTGACCTGATCTCCAAAGAT
LOC_Os02g56200
OsAffx.12660.1.S1_x_at--408--1291Chr02:34367169..34367193 (25 bp)
AGATGCATCGATTTACCGGGTGCTC
LOC_Os02g56200
OsAffx.12660.1.S1_x_at--412--2851Chr02:34367142..34367166 (25 bp)
AAGTCGGGTACTTGCCGATGTCATC
LOC_Os02g56200
OsAffx.12660.1.S1_x_at--916--1711Chr02:34367007..34367031 (25 bp)
ACCAGCCTTGGTGACATTCCAGACA
LOC_Os02g56200
OsAffx.12660.1.S1_x_at--722--7751Chr02:34366959..34366983 (25 bp)
GGTGATATTCTCCAAGTTCGTCAGG
LOC_Os02g56200
OsAffx.12660.1.S1_x_at--845--5471Chr02:34366893..34366917 (25 bp)
GAACATGTTTGCTATCTCGGTGGTC
LOC_Os02g56200
OsAffx.12660.1.S1_x_at--837--3171Chr02:34366860..34366884 (25 bp)
AATTGGCGTTCACCGTTTCATCGTC
LOC_Os02g56200
OsAffx.12660.1.S1_x_at--1029--10511Chr02:34366844..34366868 (25 bp)
TTCATCGTCGTCTTGTCGGAGGAAT
LOC_Os02g56200
OsAffx.12660.1.S1_x_at--1067--8211Chr02:34366824..34366848 (25 bp)
GGAATTTCTGTCTACATTACCACCG
LOC_Os02g56200
Target Sequence 
AAATCTGTGCTTGCGGCTTTTACTATCGAAGGAGAGCATTGTGATAAGGAGACTTGTAATGACAGCGAACGCGAAGTCAC
TTGCTCGTGACCTGATCTCCAAAGATGCATCGATTTACCGGGTGCTCTTAAGTCGGGTACTTGCCGATGTCATCTTCCAG
TGGATGGTGAAGGCAACTGGTTTTAAACGAGCCGGACAGCTCGAGCCTCACCCACGCGTGACAGCAGGAAAGAACGATGA
AGACCTGGGGCTGTCCAAAGAAGCACCAGCCTTGGTGACATTCCAGACAGCAGTAAGAGATCGCAGGCTGAAGGTGATAT
TCTCCAAGTTCGTCAGGGACATAAGAGAGGACCCCATCCTGATGGTCAGAGTGAGCTGGAACATGTTTGCTATCTCGGTG
GTCTCCGCTGCAATTGGCGTTCACCGTTTCATCGTCGTCTTGTCGGAGGAATTTCTGTCTACATTACCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12660.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis