Browse Element(s) Details


OsAffx.3088.1.S1_at

Description tigr:9630.m05571
TID=OsAffx.3088.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5614011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56100NANA2+34322532..34326946Ribonucleoside-diphosphate reductase large subunit, putative
LOC_Os02g56110Os.49469.1.S1_at11/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56110OsAffx.12658.1.S1_at10/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56120Os.23256.1.S1_at11/112+34342713..34343974AUX/IAA family protein, expressed
LOC_Os02g56130Os.3376.1.S1_at7/112+34345538..34347678Proliferating cell nuclear antigen, putative, expressed
LOC_Os02g56140OsAffx.3088.1.S1_at11/112+34348190..34350918Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g56150Os.20495.1.S1_x_at11/112+34352419..34354559expressed protein
LOC_Os02g56150Os.20495.1.S1_at11/112+34352419..34354559expressed protein
LOC_Os02g56160OsAffx.12659.1.S1_at11/112+34355335..34356540Kelch motif family protein
LOC_Os02g56170Os.16927.1.S1_at11/112+34356751..34359519PAP-specific phosphatase, putative, expressed
LOC_Os02g56180Os.23823.1.S1_at11/112+34361610..34363856oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g56190Os.53634.1.S1_at10/112+34364278..34366180expressed protein
LOC_Os02g56200OsAffx.12660.1.S1_x_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56200Os.5138.1.A1_a_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56210Os.8453.2.S1_at11/112+34372830..34376223Dcp2, box A domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0009639biological_processresponse to red or far red light
GO:0009908biological_processflower development
GO:0010017biological_processred or far red light signaling pathway
GO:0010047biological_processfruit dehiscence
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3088.1.S1_at--381--551Chr02:34349368..34349392 (25 bp)
ATCCCGCAAATGAGTGCTGCACTTG
LOC_Os02g56140
OsAffx.3088.1.S1_at--595--1291Chr02:34349321..34349345 (25 bp)
AGATCCTTCAGTTGTTTTGCAGCCG
LOC_Os02g56140
OsAffx.3088.1.S1_at--133--3331Chr02:34349277..34349301 (25 bp)
CACTTCTTCCATTTGAGCTGGCAAG
LOC_Os02g56140
OsAffx.3088.1.S1_at--397--4711Chr02:34349261..34349285 (25 bp)
GCTGGCAAGCCAACATAAACCTCTA
LOC_Os02g56140
OsAffx.3088.1.S1_at--413--1051Chr02:34349228..34349252 (25 bp)
AGGTGTTCCTAATGCAACCGCTCTG
LOC_Os02g56140
OsAffx.3088.1.S1_at--429--8531Chr02:34349205..34349229 (25 bp)
TGGAGCCTCGGTTCCTTGTAGAGTC
LOC_Os02g56140
OsAffx.3088.1.S1_at--343--10811Chr02:34349190..34349214 (25 bp)
TTGTAGAGTCTTCGCGTTCCAATCT
LOC_Os02g56140
OsAffx.3088.1.S1_at--559--6691Chr02:34349175..34349199 (25 bp)
GTTCCAATCTTCAATCCTTACGGTT
LOC_Os02g56140
OsAffx.3088.1.S1_at--277--5451Chr02:34349029..34349170 (25 bp)
GAACCCGCTGAGATGATCTATCCTG
LOC_Os02g56140
OsAffx.3088.1.S1_at--832--6291Chr02:34349000..34349024 (25 bp)
GATGATGTTAAAGCACCGCCTGACT
LOC_Os02g56140
OsAffx.3088.1.S1_at--324--5771Chr02:34348250..34348274 (25 bp)
GACGATTCAGCTTCCAATCTTGGAC
LOC_Os02g56140
Target Sequence 
ATCCCGCAAATGAGTGCTGCACTTGACCAGAATAGTGCCAAAGCATCAGATCCTTCAGTTGTTTTGCAGCCGGTGAACCA
GACTTCAGGAGCACTTCTTCCATTTGAGCTGGCAAGCCAACATAAACCTCTATTCTTACCAGGTGTTCCTAATGCAACCG
CTCTGGAGCCTCGGTTCCTTGTAGAGTCTTCGCGTTCCAATCTTCAATCCTTACGGTTCACTGAACCCGCTGAGATGATC
TATCCTGATGAGATGATGTTAAAGCACCGCCTGACTTCAGCTAGTGAGAGCACAATTGTGCCAGGAACCGATGAGAAGTC
GGTTAGGCAGAACACATACATGATGAATGCTGATCGTTTTGATAGATATGCACTCAGCAAAGACCAGTTGCAGCACATTA
TGCCGAAAAACACAGAAAGTGTACTTGATATGCCACACTTGCAAAGAATTCTGACAAAGGTGTTAATTGTTTCAGATTAT
AAGCTGACGATTCAGCTTCCAATCTTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis