Browse Element(s) Details


Os.3376.1.S1_at

Description gb:AK071591.1
DB_XREF= gi:32981614
TID=Os.3376.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105C08, full insert sequence.
FL= gb:AK071591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g561307/11Proliferating cell nuclear antigen, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56090OsAffx.3087.1.S1_at9/112+34319369..34321485expressed protein
LOC_Os02g56100NANA2+34322532..34326946Ribonucleoside-diphosphate reductase large subunit, putative
LOC_Os02g56110Os.49469.1.S1_at11/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56110OsAffx.12658.1.S1_at10/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56120Os.23256.1.S1_at11/112+34342713..34343974AUX/IAA family protein, expressed
LOC_Os02g56130Os.3376.1.S1_at7/112+34345538..34347678Proliferating cell nuclear antigen, putative, expressed
LOC_Os02g56140OsAffx.3088.1.S1_at11/112+34348190..34350918Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g56150Os.20495.1.S1_x_at11/112+34352419..34354559expressed protein
LOC_Os02g56150Os.20495.1.S1_at11/112+34352419..34354559expressed protein
LOC_Os02g56160OsAffx.12659.1.S1_at11/112+34355335..34356540Kelch motif family protein
LOC_Os02g56170Os.16927.1.S1_at11/112+34356751..34359519PAP-specific phosphatase, putative, expressed
LOC_Os02g56180Os.23823.1.S1_at11/112+34361610..34363856oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g56190Os.53634.1.S1_at10/112+34364278..34366180expressed protein
LOC_Os02g56200OsAffx.12660.1.S1_x_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56200Os.5138.1.A1_a_at11/112+34366548..34372478ABC1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0006275biological_processregulation of DNA replication
GO:0005634cellular_componentnucleus
GO:0005660cellular_componentdelta-DNA polymerase cofactor complex
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0030337molecular_functionDNA polymerase processivity factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3376.1.S1_at--16--4691Chr02:34347227..34347251 (25 bp)
GCAGGAACCGGTGTCACTAACCTTT
LOC_Os02g56130
Os.3376.1.S1_at--570--10691Chr02:34347250..34347274 (25 bp)
TTGCCCTGAGGTACATGAACTCCTT
LOC_Os02g56130
Os.3376.1.S1_at--552--2231Chr02:34347306..34347330 (25 bp)
ACAATCAGCCTTTCATCTGAGCTGC
LOC_Os02g56130
Os.3376.1.S1_at--168--1391Chr02:34347462..34347486 (25 bp)
AGACCATCATCCTTTGCTTAACAAT
LOC_Os02g56130
Os.3376.1.S1_at--163--6791Chr02:34347506..34347530 (25 bp)
GTTATGCTTATCATCGCTTACGACG
LOC_Os02g56130
Os.3376.1.S1_at--551--9071Chr02:34347534..34347558 (25 bp)
TGCTTTTTACCTTTGTATCTGTGAC
LOC_Os02g56130
Os.3376.1.S1_at--94--6911Chr02:34347548..34347572 (25 bp)
GTATCTGTGACTTCTGTAAATCCTT
LOC_Os02g56130
Os.3376.1.S1_at--820--8071Chr02:34347691..34347715 (25 bp)
GGAGCTTCCTTTGGGTTGACACTAA
NONE
Os.3376.1.S1_at--46--9791Chr02:34347713..34347737 (25 bp)
TAACTTCATCAGTGTTTGGACCCAG
NONE
Os.3376.1.S1_at--210--6871Chr02:34347726..34347750 (25 bp)
GTTTGGACCCAGAATTGCTATCATC
NONE
Os.3376.1.S1_at--517--10731Chr02:34347740..34347764 (25 bp)
TTGCTATCATCCTCAAGCTGTGAAA
NONE
Target Sequence 
GCAGGAACCGGTGTCACTAACCTTTGCCCTGAGGTACATGAACTCCTTCACCAAGGCAANGCCCGCTCTCTGAACAAGTT
ACAATCAGCCTTTCATCTGAGCTGCCAGTGGTGGTTGAGTATAAGATTGCAGAGATGGGCTACATTAGATTTTATCTGGC
GCCAAAGATTGAAGAAGATGAGGAAATGAAGTCGTGATTGTCGCATAAGGATATGACAAAATNCCCCCTAGTCTTCAGAC
CATCATCCTTTGCTTAACAATTGTTTGTAAGCAAAATGATGTTATGCTTATCATCGCTTACGACGGAATGCTTTTTACCT
TTGTATCTGTGACTTCTGTAAATCCTTGGATTTACAGTGATGAATGTTAGGTTTAGTAGATTTGTGAGTTTATGACTGCA
TTGCTGTAGCATGATTGTGCTGCTGTTTGTTTGTTCAATTCGGTTGTTACATATTTGTTGGGAGAGGAGCTTCCTTTGGG
TTGACACTAACTTCATCAGTGTTTGGACCCAGAATTGCTATCATCCTCAAGCTGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis