Browse Element(s) Details


OsAffx.3087.1.S1_at

Description tigr:9630.m05566
TID=OsAffx.3087.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g560909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56030Os.51243.1.S1_at11/112+34293595..34294763expressed protein
LOC_Os02g56040Os.52697.1.S1_at11/112+34294763..34301742DnaJ C terminal region family protein, expressed
LOC_Os02g56050Os.15820.1.A1_at10/112+34303557..34305979MoeZ/MoeB domain containing protein, expressed
LOC_Os02g56060NANA2+34306837..34312799retrotransposon protein, putative, unclassified
LOC_Os02g56070Os.28943.1.S1_x_at3/112+34313419..34315489retrotransposon protein, putative, unclassified
LOC_Os02g56080Os.47130.4.A1_x_at3/112+34316047..34318217retrotransposon protein, putative, unclassified, expressed
LOC_Os02g56080Os.27455.2.S1_at1/112+34316047..34318217retrotransposon protein, putative, unclassified, expressed
LOC_Os02g56090OsAffx.3087.1.S1_at9/112+34319369..34321485expressed protein
LOC_Os02g56100NANA2+34322532..34326946Ribonucleoside-diphosphate reductase large subunit, putative
LOC_Os02g56110Os.49469.1.S1_at11/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56110OsAffx.12658.1.S1_at10/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56120Os.23256.1.S1_at11/112+34342713..34343974AUX/IAA family protein, expressed
LOC_Os02g56130Os.3376.1.S1_at7/112+34345538..34347678Proliferating cell nuclear antigen, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3087.1.S1_at--1022--7631Chr02:34319411..34319435 (25 bp)
GGGAGAGGTCCGATGTACCCAGCGT
LOC_Os02g56090
OsAffx.3087.1.S1_at--678--751Chr02:34319423..34319447 (25 bp)
ATGTACCCAGCGTCTGCTGATCCTG
LOC_Os02g56090
OsAffx.3087.1.S1_at--921--1631Chr02:34319431..34319455 (25 bp)
AGCGTCTGCTGATCCTGCTTCGGCG
LOC_Os02g56090
OsAffx.3087.1.S1_at--501--4191NONE
CCCTGCTACGTTCCAACGAGTTAAT
NONE
OsAffx.3087.1.S1_at--789--4011NONE
CGTTCCAACGAGTTAATGATCCAAT
NONE
OsAffx.3087.1.S1_at--891--9752Chr02:34320723..34320747 (25 bp)
TAATGATCCAATTGCTCTTGAGCTC
LOC_Os02g56090
OsAffx.3087.1.S1_at--854--4811Chr02:34320736..34320760 (25 bp)
GCTCTTGAGCTCCTGAGCAAGTCAG
LOC_Os02g56090
OsAffx.3087.1.S1_at--502--5171Chr02:34320752..34320776 (25 bp)
GCAAGTCAGGCGAGAGATTTCACTA
LOC_Os02g56090
OsAffx.3087.1.S1_at--549--3491Chr02:34320758..34320782 (25 bp)
CAGGCGAGAGATTTCACTATATTAT
LOC_Os02g56090
OsAffx.3087.1.S1_at--339--2751Chr02:34320790..34321284 (25 bp)
AAGAACCTTGCTGCTGTACTCCGCA
LOC_Os02g56090
OsAffx.3087.1.S1_at--327--9131Chr02:34321271..34321295 (25 bp)
TGCTGTACTCCGCAACTGCATTGAC
LOC_Os02g56090
Target Sequence 
GGGAGAGGTCCGATGTACCCAGCGTCTGCTGATCCTGCTTCGGCGGCAACCCCTGCTACGTTCCAACGAGTTAATGATCC
AATTGCTCTTGAGCTCCTGAGCAAGTCAGGCGAGAGATTTCACTATATTATGAATAAGAAGAACCTTGCTGCTGTACTCC
GCAACTGCATTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis