Browse Element(s) Details


OsAffx.12658.1.S1_at

Description tigr:9630.m05568
TID=OsAffx.12658.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Adaptin N terminal region, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5611010/11gamma-adaptin 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56050Os.15820.1.A1_at10/112+34303557..34305979MoeZ/MoeB domain containing protein, expressed
LOC_Os02g56060NANA2+34306837..34312799retrotransposon protein, putative, unclassified
LOC_Os02g56070Os.28943.1.S1_x_at3/112+34313419..34315489retrotransposon protein, putative, unclassified
LOC_Os02g56080Os.47130.4.A1_x_at3/112+34316047..34318217retrotransposon protein, putative, unclassified, expressed
LOC_Os02g56080Os.27455.2.S1_at1/112+34316047..34318217retrotransposon protein, putative, unclassified, expressed
LOC_Os02g56090OsAffx.3087.1.S1_at9/112+34319369..34321485expressed protein
LOC_Os02g56100NANA2+34322532..34326946Ribonucleoside-diphosphate reductase large subunit, putative
LOC_Os02g56110Os.49469.1.S1_at11/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56110OsAffx.12658.1.S1_at10/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56120Os.23256.1.S1_at11/112+34342713..34343974AUX/IAA family protein, expressed
LOC_Os02g56130Os.3376.1.S1_at7/112+34345538..34347678Proliferating cell nuclear antigen, putative, expressed
LOC_Os02g56140OsAffx.3088.1.S1_at11/112+34348190..34350918Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g56150Os.20495.1.S1_x_at11/112+34352419..34354559expressed protein
LOC_Os02g56150Os.20495.1.S1_at11/112+34352419..34354559expressed protein
LOC_Os02g56160OsAffx.12659.1.S1_at11/112+34355335..34356540Kelch motif family protein
LOC_Os02g56170Os.16927.1.S1_at11/112+34356751..34359519PAP-specific phosphatase, putative, expressed
LOC_Os02g56180Os.23823.1.S1_at11/112+34361610..34363856oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
GO:0030121cellular_componentAP-1 adaptor complex
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12658.1.S1_at--227--7351Chr02:34329708..34329732 (25 bp)
GTGCACAACCTCTGGTTCGACGGCG
LOC_Os02g56110
OsAffx.12658.1.S1_at--1139--9351Chr02:34329635..34329659 (25 bp)
TCGAGTACCTCGACATGTTCTACTG
LOC_Os02g56110
OsAffx.12658.1.S1_at--205--5671Chr02:34329624..34329648 (25 bp)
GACATGTTCTACTGCGGCTTCGTGC
LOC_Os02g56110
OsAffx.12658.1.S1_at--1103--9171Chr02:34329602..34329626 (25 bp)
TGCCGTTCTCCGTGATGACGATCGA
LOC_Os02g56110
OsAffx.12658.1.S1_at--768--4651Chr02:34329521..34329545 (25 bp)
GCGTCGAGCTTGTCAATGCGCCCAA
LOC_Os02g56110
OsAffx.12658.1.S1_at--429--3011Chr02:34329507..34329531 (25 bp)
AATGCGCCCAAGCTACTACGGGTGG
LOC_Os02g56110
OsAffx.12658.1.S1_at--689--8151Chr02:34329379..34329476 (25 bp)
GGAACACCGTCGCTCAAAGTAAGCT
LOC_Os02g56110
OsAffx.12658.1.S1_at--453--2431Chr02:34329346..34329370 (25 bp)
AAAACCCTGGTCAATTAGAGCGGCT
LOC_Os02g56110
OsAffx.12658.1.S1_at--536--10031Chr02:34329331..34329355 (25 bp)
TAGAGCGGCTTTGCATCAAGTCCTT
LOC_Os02g56110
OsAffx.12658.1.S1_at--373--2651NONE
AAGTCCTTCGGCACAAAGACGGACA
NONE
OsAffx.12658.1.S1_at--186--2771Chr02:34327992..34328015 (24 bp)
AAGACGGACAACCACGTGTGCTCTG
LOC_Os02g56110
Target Sequence 
GTGCACAACCTCTGGTTCGACGGCGGCGACACGGCGGCCACGATCACCCACCTCCTCCATGGCTGCCCCGCCCTCGAGTA
CCTCGACATGTTCTACTGCGGCTTCGTGCCGTTCTCCGTGATGACGATCGACGCGCCGCCGGAGTCGCGGCTGGCGACGC
TGGTGTTCGACCAGTGCCACGCCGCCGGCGTCGAGCTTGTCAATGCGCCCAAGCTACTACGGGTGGCTCGACGGCGAGCC
GGCGGTCTCGTACGGCGGAACACCGTCGCTCAAAGTAAGCTAATCCCAGAAAACCCTGGTCAATTAGAGCGGCTTTGCAT
CAAGTCCTTCGGCACAAAGACGGACAACCACGTGTGCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis