Browse Element(s) Details


Os.23256.1.S1_at

Description gb:AK073365.1
DB_XREF= gi:32983388
TID=Os.23256.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030K18, full insert sequence.
FL= gb:AK073365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5612011/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56080Os.47130.4.A1_x_at3/112+34316047..34318217retrotransposon protein, putative, unclassified, expressed
LOC_Os02g56080Os.27455.2.S1_at1/112+34316047..34318217retrotransposon protein, putative, unclassified, expressed
LOC_Os02g56090OsAffx.3087.1.S1_at9/112+34319369..34321485expressed protein
LOC_Os02g56100NANA2+34322532..34326946Ribonucleoside-diphosphate reductase large subunit, putative
LOC_Os02g56110Os.49469.1.S1_at11/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56110OsAffx.12658.1.S1_at10/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56120Os.23256.1.S1_at11/112+34342713..34343974AUX/IAA family protein, expressed
LOC_Os02g56130Os.3376.1.S1_at7/112+34345538..34347678Proliferating cell nuclear antigen, putative, expressed
LOC_Os02g56140OsAffx.3088.1.S1_at11/112+34348190..34350918Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g56150Os.20495.1.S1_x_at11/112+34352419..34354559expressed protein
LOC_Os02g56150Os.20495.1.S1_at11/112+34352419..34354559expressed protein
LOC_Os02g56160OsAffx.12659.1.S1_at11/112+34355335..34356540Kelch motif family protein
LOC_Os02g56170Os.16927.1.S1_at11/112+34356751..34359519PAP-specific phosphatase, putative, expressed
LOC_Os02g56180Os.23823.1.S1_at11/112+34361610..34363856oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g56190Os.53634.1.S1_at10/112+34364278..34366180expressed protein
LOC_Os02g56200OsAffx.12660.1.S1_x_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56200Os.5138.1.A1_a_at11/112+34366548..34372478ABC1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009630biological_processgravitropism
GO:0009638biological_processphototropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009880biological_processembryonic pattern specification
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23256.1.S1_at--1016--4691Chr02:34343128..34343152 (25 bp)
GCGGCGCCAACTACGTGAAGGTGAA
LOC_Os02g56120
Os.23256.1.S1_at--233--931Chr02:34343175..34343199 (25 bp)
AGGAAGGTTGATTTGGCCCTCCATT
LOC_Os02g56120
Os.23256.1.S1_at--959--8531Chr02:34343434..34343458 (25 bp)
TGGACCTGTGGTCACCTACGAGGAT
LOC_Os02g56120
Os.23256.1.S1_at--114--4431Chr02:34343491..34343632 (25 bp)
GCCATGGGATGATTTTGCACGATCT
LOC_Os02g56120
Os.23256.1.S1_at--53--5111Chr02:34343624..34343648 (25 bp)
GCACGATCTGTGAAACGCCTGAAGA
LOC_Os02g56120
Os.23256.1.S1_at--154--1831Chr02:34343638..34343662 (25 bp)
ACGCCTGAAGATACTGGGTTAACTG
LOC_Os02g56120
Os.23256.1.S1_at--476--1571Chr02:34343699..34343723 (25 bp)
AGCTCGGTTTTGGTTGCCTGGCATC
LOC_Os02g56120
Os.23256.1.S1_at--112--10191Chr02:34343829..34343853 (25 bp)
TATACTGTAGTTGGGCACATCTCAT
LOC_Os02g56120
Os.23256.1.S1_at--879--2091Chr02:34343845..34343869 (25 bp)
ACATCTCATGTGTGCCCAGGGCTAG
LOC_Os02g56120
Os.23256.1.S1_at--933--7271Chr02:34343856..34343880 (25 bp)
GTGCCCAGGGCTAGGTTTTGAGAAT
LOC_Os02g56120
Os.23256.1.S1_at--560--6711Chr02:34343890..34343914 (25 bp)
GTTCTGTGTTTTTACACCTTCTATA
LOC_Os02g56120
Target Sequence 
GCGGCGCCAACTACGTGAAGGTGAAGAAGGAAGGCGACGCCATCGGGAGGAAGGTTGATTTGGCCCTCCATTCCTCCTAC
GACGAGCTCGNTGCCACGCTCGCCCGCATGTTCCCCACCAACGACCACCAAGGCGAGAAGAAAATGGCCAATGATGATCA
TGGCGATGCCGCTGGACCTGTGGTCACCTACGAGGATGGTGATGGGGATTGGATGCTGGTTGGGGACGTGCCATGGGATG
ATTTTGCACGATCTGTGAAACGCCTGAAGATACTGGGTTAACTGAACTGAAGGAGATGCATGCGTGAGTTGATGGAGCAC
AGCTCGGTTTTGGTTGCCTGGCATCTGCGTGTGGGTGTGCACTGATGTATGTACATGTTTTCGTTTTCAGNCAGGATGTT
AGGACGAGAGAAAGAGCTTTCTGTCAAAGACTATATACTGCTAGCTTATATATACTGTAGTTGGGCACATCTCATGTGTG
CCCAGGGCTAGGTTTTGAGAATGTTTACAGAGTTCTGTGTTTTTACACCTTCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis