Browse Element(s) Details


Os.49469.1.S1_at

Description gb:AK071884.1
DB_XREF= gi:32981907
TID=Os.49469.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047F12, full insert sequence.
FL= gb:AK071884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5611011/11gamma-adaptin 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56050Os.15820.1.A1_at10/112+34303557..34305979MoeZ/MoeB domain containing protein, expressed
LOC_Os02g56060NANA2+34306837..34312799retrotransposon protein, putative, unclassified
LOC_Os02g56070Os.28943.1.S1_x_at3/112+34313419..34315489retrotransposon protein, putative, unclassified
LOC_Os02g56080Os.47130.4.A1_x_at3/112+34316047..34318217retrotransposon protein, putative, unclassified, expressed
LOC_Os02g56080Os.27455.2.S1_at1/112+34316047..34318217retrotransposon protein, putative, unclassified, expressed
LOC_Os02g56090OsAffx.3087.1.S1_at9/112+34319369..34321485expressed protein
LOC_Os02g56100NANA2+34322532..34326946Ribonucleoside-diphosphate reductase large subunit, putative
LOC_Os02g56110Os.49469.1.S1_at11/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56110OsAffx.12658.1.S1_at10/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56120Os.23256.1.S1_at11/112+34342713..34343974AUX/IAA family protein, expressed
LOC_Os02g56130Os.3376.1.S1_at7/112+34345538..34347678Proliferating cell nuclear antigen, putative, expressed
LOC_Os02g56140OsAffx.3088.1.S1_at11/112+34348190..34350918Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g56150Os.20495.1.S1_x_at11/112+34352419..34354559expressed protein
LOC_Os02g56150Os.20495.1.S1_at11/112+34352419..34354559expressed protein
LOC_Os02g56160OsAffx.12659.1.S1_at11/112+34355335..34356540Kelch motif family protein
LOC_Os02g56170Os.16927.1.S1_at11/112+34356751..34359519PAP-specific phosphatase, putative, expressed
LOC_Os02g56180Os.23823.1.S1_at11/112+34361610..34363856oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
GO:0030121cellular_componentAP-1 adaptor complex
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49469.1.S1_at--1014--4771Chr02:34331092..34331116 (25 bp)
GCTGCCGTTTCACTTTTTATGCACA
LOC_Os02g56110
Os.49469.1.S1_at--585--10131Chr02:34331075..34331099 (25 bp)
TATGCACACGTGTCTGCTGTCAACA
LOC_Os02g56110
Os.49469.1.S1_at--91--7951Chr02:34330949..34330973 (25 bp)
GGATTTCTTCTCATGTTTTGGACCT
LOC_Os02g56110
Os.49469.1.S1_at--1101--8091Chr02:34330930..34330954 (25 bp)
GGACCTATTTGCCTTGTGCTTATAG
LOC_Os02g56110
Os.49469.1.S1_at--95--2871Chr02:34330808..34330832 (25 bp)
AAGTGAGCAATTTTCCTGCCGGACT
LOC_Os02g56110
Os.49469.1.S1_at--212--4491Chr02:34330791..34330815 (25 bp)
GCCGGACTATAGTACTGCTCGGTCA
LOC_Os02g56110
Os.49469.1.S1_at--129--171Chr02:34330748..34330772 (25 bp)
ATTATTGTCGTGATAGTCCTCTCCA
LOC_Os02g56110
Os.49469.1.S1_at--978--191Chr02:34330724..34330748 (25 bp)
ATTTGCGTACCTTGTTCTACGTGGT
LOC_Os02g56110
Os.49469.1.S1_at--751--10531Chr02:34330710..34330734 (25 bp)
TTCTACGTGGTTCTTTCTGTTTTCT
LOC_Os02g56110
Os.49469.1.S1_at--220--2991Chr02:34330567..34330591 (25 bp)
AATGTACTCATCAGTTCACGCCTGG
LOC_Os02g56110
Os.49469.1.S1_at--728--4271Chr02:34330547..34330571 (25 bp)
CCTGGTGTGCTGTGTGCATCAGTGA
LOC_Os02g56110
Target Sequence 
GCTGCCGTTTCACTTTTTATGCACACGTGTCTGCTGTCAACATGTGTATACCATTCTGACAGGTGCATAATCTGCAGAAA
TTTCAGTCTTTGAAATTCATGATTTTCTTTCAAGTTATGGAGGTCTTCAGATTTAGAACATACGGATTTCTTCTCATGTT
TTGGACCTATTTGCCTTGTGCTTATAGCTGATTTCGCTTTGCTTTTCTTCTGAACAGAAACCACTTGCAATGCGTATCCG
GATGTCATACAAAGTGAATGGTGAGGACAGACTGGAACAAGGCCAAGTGAGCAATTTTCCTGCCGGACTATAGTACTGCT
CGGTCAGTGCCATTTTGTTGTTACATTATTGTCGTGATAGTCCTCTCCATTTGCGTACCTTGTTCTACGTGGTTCTTTCT
GTTTTCTGTCTCCCTTGGAGGGGTTGGTTGATCAAAAATAGTTATTTTCTCATTCATTCTTCCTATATATTGTATAGTAG
TAGAAAGGTACAATGTGAAATATTCAGATTCATCACCAAGATACCAATGTACTCATCAGTTCACGCCTGGTGTGCTGTGT
GCATCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis