Browse Element(s) Details


Os.20495.1.S1_x_at

Description gb:AK100109.1
DB_XREF= gi:32985318
TID=Os.20495.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004O08, full insert sequence.
FL= gb:AK100109.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5615011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56110Os.49469.1.S1_at11/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56110OsAffx.12658.1.S1_at10/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56120Os.23256.1.S1_at11/112+34342713..34343974AUX/IAA family protein, expressed
LOC_Os02g56130Os.3376.1.S1_at7/112+34345538..34347678Proliferating cell nuclear antigen, putative, expressed
LOC_Os02g56140OsAffx.3088.1.S1_at11/112+34348190..34350918Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g56150Os.20495.1.S1_x_at11/112+34352419..34354559expressed protein
LOC_Os02g56150Os.20495.1.S1_at11/112+34352419..34354559expressed protein
LOC_Os02g56160OsAffx.12659.1.S1_at11/112+34355335..34356540Kelch motif family protein
LOC_Os02g56170Os.16927.1.S1_at11/112+34356751..34359519PAP-specific phosphatase, putative, expressed
LOC_Os02g56180Os.23823.1.S1_at11/112+34361610..34363856oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g56190Os.53634.1.S1_at10/112+34364278..34366180expressed protein
LOC_Os02g56200OsAffx.12660.1.S1_x_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56200Os.5138.1.A1_a_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56210Os.8453.2.S1_at11/112+34372830..34376223Dcp2, box A domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20495.1.S1_x_at--318--4971Chr02:34353188..34353212 (25 bp)
GCATCTGCGTGACCGATCTAGTAGA
LOC_Os02g56150
Os.20495.1.S1_x_at--690--1591Chr02:34353132..34353156 (25 bp)
AGCTCGCGCGACAAGAAAGCCCGGG
LOC_Os02g56150
Os.20495.1.S1_x_at--1007--5011Chr02:34353075..34353099 (25 bp)
GCAGGTCATGGCATGGCCGACGCAT
LOC_Os02g56150
Os.20495.1.S1_x_at--562--6291Chr02:34352948..34353067 (25 bp)
GATGACCAAGAGATCGGCCTACTTC
LOC_Os02g56150
Os.20495.1.S1_x_at--106--571Chr02:34352884..34352908 (25 bp)
ATCCTGGAGCTGAAAGACGCCGTCG
LOC_Os02g56150
Os.20495.1.S1_x_at--798--8391Chr02:34352860..34352884 (25 bp)
GGCGCGTTCCAATCCATGGACATGG
LOC_Os02g56150
Os.20495.1.S1_x_at--106--4631Chr02:34352827..34352851 (25 bp)
GCGAGGTTCCACTGCAGCTCGCGTG
LOC_Os02g56150
Os.20495.1.S1_x_at--426--1591Chr02:34352812..34352836 (25 bp)
AGCTCGCGTGCCTGACCGACGAGAC
LOC_Os02g56150
Os.20495.1.S1_x_at--393--6711Chr02:34352653..34352677 (25 bp)
GTTCGAGGGCTTCCCTTCAAAGAAG
LOC_Os02g56150
Os.20495.1.S1_x_at--336--9911Chr02:34352598..34352622 (25 bp)
TACTCCAAGCTGGACGGCGTCGTTG
LOC_Os02g56150
Os.20495.1.S1_x_at--1046--6671Chr02:34352577..34352601 (25 bp)
GTTGCCACGCCGAGTATTTTAAACA
LOC_Os02g56150
Target Sequence 
GCATCTGCGTGACCGATCTAGTAGAAGGCGGCGCTTCTNACCTGCATGGCGGCAAGAGCTCGCGCGACAAGAAAGCCCGG
GCGTCGCCGGCGGCCGGCGCCAAGGGCGGTGGTGCAGGTCATGGCATGGCCGACGCATCGGCCGAGATGACCAAGAGATC
GGCCTACTTCCGGCAAATCGAGGAGGACGTCGGAACCCACCCGGCGGCGATCCTGGAGCTGAAAGACGCCGTCGGCGCGT
TCCAATCCATGGACATGGGCGAGNTGGCGAGGTTCCACTGCAGCTCGCGTGCCTGACCGACGAGACGCAGGTTCGAGGGC
TTCCCTTCAAAGAAGCTGGAGGCGNCTGAGAATGGCCGCGGCGCTCTACTCCAAGCTGGACGGCGTCGTTGCCACGCCGA
GTATTTTAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20495.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis