Browse Element(s) Details


Os.53634.1.S1_at

Description gb:AK073676.1
DB_XREF= gi:32983699
TID=Os.53634.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033049C20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033049C20, full insert sequence.
FL= gb:AK073676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5619010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56120Os.23256.1.S1_at11/112+34342713..34343974AUX/IAA family protein, expressed
LOC_Os02g56130Os.3376.1.S1_at7/112+34345538..34347678Proliferating cell nuclear antigen, putative, expressed
LOC_Os02g56140OsAffx.3088.1.S1_at11/112+34348190..34350918Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g56150Os.20495.1.S1_x_at11/112+34352419..34354559expressed protein
LOC_Os02g56150Os.20495.1.S1_at11/112+34352419..34354559expressed protein
LOC_Os02g56160OsAffx.12659.1.S1_at11/112+34355335..34356540Kelch motif family protein
LOC_Os02g56170Os.16927.1.S1_at11/112+34356751..34359519PAP-specific phosphatase, putative, expressed
LOC_Os02g56180Os.23823.1.S1_at11/112+34361610..34363856oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g56190Os.53634.1.S1_at10/112+34364278..34366180expressed protein
LOC_Os02g56200OsAffx.12660.1.S1_x_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56200Os.5138.1.A1_a_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56210Os.8453.2.S1_at11/112+34372830..34376223Dcp2, box A domain containing protein, expressed
LOC_Os02g56220OsAffx.24889.1.S1_at11/112+34382063..34383695expressed protein
LOC_Os02g56229NANA2+34385019..34386372NA
LOC_Os02g56240NANA2+34388001..34388696retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53634.1.S1_at--612--1591NONE
AGCTCCGGAGGCAATTTGAGCGTGC
NONE
Os.53634.1.S1_at--962--10751Chr02:34364990..34365014 (25 bp)
TTGAGCGTGCCAACCTAGAAGCAAT
LOC_Os02g56190
Os.53634.1.S1_at--650--5591Chr02:34364941..34364965 (25 bp)
GAAATATGACACAGAGTTTGCGAAA
LOC_Os02g56190
Os.53634.1.S1_at--870--10331Chr02:34364810..34364917 (25 bp)
TTTAAAGGCTAAGGCCTCACTCTCT
LOC_Os02g56190
Os.53634.1.S1_at--1038--4291Chr02:34364796..34364820 (25 bp)
CCTCACTCTCTGCTTCAACTAAGAG
LOC_Os02g56190
Os.53634.1.S1_at--804--6591Chr02:34364516..34364539 (24 bp)
GATTGCACTGTTACATCGAACCTTA
LOC_Os02g56190
Os.53634.1.S1_at--136--6951Chr02:34364457..34364481 (25 bp)
GTAGTTTAGCATTCATCTTCCTTAA
LOC_Os02g56190
Os.53634.1.S1_at--635--8951Chr02:34364428..34364452 (25 bp)
TGACATATGAACTAGCGGGAGGCCT
LOC_Os02g56190
Os.53634.1.S1_at--586--6071Chr02:34364329..34364353 (25 bp)
GAGTTTTACACATGCCATTTTGAAG
LOC_Os02g56190
Os.53634.1.S1_at--418--3591Chr02:34364314..34364338 (25 bp)
CATTTTGAAGTGGTTGCTCCTGACT
LOC_Os02g56190
Os.53634.1.S1_at--75--4791Chr02:34364299..34364323 (25 bp)
GCTCCTGACTAGCAAACTACCAGTG
LOC_Os02g56190
Target Sequence 
AGCTCCGGAGGCAATTTGAGCGTGCCAACCTAGAAGCAATGGATGAATCTGCTGAATGGAGAATGAAATATGACACAGAG
TTTGCGAAAAACAAACAGATGCAAGATGAACTTTTAAAGGCTAAGGCCTCACTCTCTGCTTCAACTAAGAGATTTAGCCT
ATTGAAAAAGGATAATGAGGTGTTGAAGAGGCAGATTCAGATCATGAAACAGCAATGCGATTGCACTGTTACATCGAACC
TTACACAAGAATAATGACATTACTACATACTTCTTTTGTAGTTTAGCATTCATCTTCCTTAAAATTTGACATATGAACTA
GCGGGAGGCCTAGTAGAGTGGTGAAGTATGAAGTAGGAGAAATAGCTACTGTAGCAAGAATATTACTTTGCTTGCAATTG
TTAGTGAGTTTTACACATGCCATTTTGAAGTGGTTGCTCCTGACTAGCAAACTACCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis