Browse Element(s) Details


Os.5138.1.A1_a_at

Description gb:AK105072.1
DB_XREF= gi:32990281
TID=Os.5138.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.5138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D11, full insert sequence.
FL= gb:AK105072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5620011/11ABC1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56120Os.23256.1.S1_at11/112+34342713..34343974AUX/IAA family protein, expressed
LOC_Os02g56130Os.3376.1.S1_at7/112+34345538..34347678Proliferating cell nuclear antigen, putative, expressed
LOC_Os02g56140OsAffx.3088.1.S1_at11/112+34348190..34350918Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g56150Os.20495.1.S1_x_at11/112+34352419..34354559expressed protein
LOC_Os02g56150Os.20495.1.S1_at11/112+34352419..34354559expressed protein
LOC_Os02g56160OsAffx.12659.1.S1_at11/112+34355335..34356540Kelch motif family protein
LOC_Os02g56170Os.16927.1.S1_at11/112+34356751..34359519PAP-specific phosphatase, putative, expressed
LOC_Os02g56180Os.23823.1.S1_at11/112+34361610..34363856oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g56190Os.53634.1.S1_at10/112+34364278..34366180expressed protein
LOC_Os02g56200OsAffx.12660.1.S1_x_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56200Os.5138.1.A1_a_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56210Os.8453.2.S1_at11/112+34372830..34376223Dcp2, box A domain containing protein, expressed
LOC_Os02g56220OsAffx.24889.1.S1_at11/112+34382063..34383695expressed protein
LOC_Os02g56229NANA2+34385019..34386372NA
LOC_Os02g56240NANA2+34388001..34388696retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.5138.1.A1_a_at--341--1371Chr02:34366757..34366781 (25 bp)
AGAGCAGCAACTATGCCTTGGTGCA
LOC_Os02g56200
Os.5138.1.A1_a_at--771--591Chr02:34366745..34366769 (25 bp)
ATGCCTTGGTGCATGAAGTAACTTT
LOC_Os02g56200
Os.5138.1.A1_a_at--1112--10331Chr02:34366723..34366747 (25 bp)
TTTTTTACTGGGTATCCCGTAGCTG
LOC_Os02g56200
Os.5138.1.A1_a_at--919--7671Chr02:34366714..34366738 (25 bp)
GGGTATCCCGTAGCTGTATATAAAC
LOC_Os02g56200
Os.5138.1.A1_a_at--27--6891Chr02:34366699..34366723 (25 bp)
GTATATAAACGTTTTCAGGAGCAGA
LOC_Os02g56200
Os.5138.1.A1_a_at--603--8071Chr02:34366682..34366706 (25 bp)
GGAGCAGAATCAGCCATCCTGTAGC
LOC_Os02g56200
Os.5138.1.A1_a_at--436--9671Chr02:34366673..34366697 (25 bp)
TCAGCCATCCTGTAGCTGACAGTAG
LOC_Os02g56200
Os.5138.1.A1_a_at--242--9391Chr02:34366647..34366671 (25 bp)
TCGATCAGAGTTCTCCATGGCTAGT
LOC_Os02g56200
Os.5138.1.A1_a_at--806--10591Chr02:34366637..34366661 (25 bp)
TTCTCCATGGCTAGTTCTCCGTAAA
LOC_Os02g56200
Os.5138.1.A1_a_at--153--6731Chr02:34366624..34366648 (25 bp)
GTTCTCCGTAAATTTGTCTTCTACT
LOC_Os02g56200
Os.5138.1.A1_a_at--158--7151Chr02:34366609..34366633 (25 bp)
GTCTTCTACTATTACAGGCTTCCTT
LOC_Os02g56200
Target Sequence
AGAGCAGCAACTATGCCTTGGTGCATGAAGTAACTTTTTTACTGGGTATCCCGTAGCTGTATATAAACGTTTTCAGGAGC
AGAATCAGCCATCCTGTAGCTGACAGTAGNTCGATCAGAGTTCTCCATGGCTAGTTCTCCGTAAATTTGTCTTCTACTAT
TACAGGCTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5138.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis