Browse Element(s) Details


Os.23823.1.S1_at

Description gb:AK099516.1
DB_XREF= gi:32984725
TID=Os.23823.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.23823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-307-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030C12, full insert sequence.
FL= gb:AK099516.1 gb:AK059822.1 gb:AK104587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5618011/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56110Os.49469.1.S1_at11/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56110OsAffx.12658.1.S1_at10/112+34327792..34338160gamma-adaptin 1, putative, expressed
LOC_Os02g56120Os.23256.1.S1_at11/112+34342713..34343974AUX/IAA family protein, expressed
LOC_Os02g56130Os.3376.1.S1_at7/112+34345538..34347678Proliferating cell nuclear antigen, putative, expressed
LOC_Os02g56140OsAffx.3088.1.S1_at11/112+34348190..34350918Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g56150Os.20495.1.S1_x_at11/112+34352419..34354559expressed protein
LOC_Os02g56150Os.20495.1.S1_at11/112+34352419..34354559expressed protein
LOC_Os02g56160OsAffx.12659.1.S1_at11/112+34355335..34356540Kelch motif family protein
LOC_Os02g56170Os.16927.1.S1_at11/112+34356751..34359519PAP-specific phosphatase, putative, expressed
LOC_Os02g56180Os.23823.1.S1_at11/112+34361610..34363856oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g56190Os.53634.1.S1_at10/112+34364278..34366180expressed protein
LOC_Os02g56200OsAffx.12660.1.S1_x_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56200Os.5138.1.A1_a_at11/112+34366548..34372478ABC1 family protein, putative, expressed
LOC_Os02g56210Os.8453.2.S1_at11/112+34372830..34376223Dcp2, box A domain containing protein, expressed
LOC_Os02g56220OsAffx.24889.1.S1_at11/112+34382063..34383695expressed protein
LOC_Os02g56229NANA2+34385019..34386372NA
LOC_Os02g56240NANA2+34388001..34388696retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0030154biological_processcell differentiation
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23823.1.S1_at--850--7131Chr02:34363118..34363142 (25 bp)
GTCATTCTGGACAACATCGGTGGAT
LOC_Os02g56180
Os.23823.1.S1_at--526--7511Chr02:34363137..34363161 (25 bp)
GTGGATTGTATCTTCAGCGTAACCT
LOC_Os02g56180
Os.23823.1.S1_at--1135--8991Chr02:34363222..34363246 (25 bp)
TGAAGTGAACCTGCAACCCATGCTT
LOC_Os02g56180
Os.23823.1.S1_at--729--3511Chr02:34363240..34363264 (25 bp)
CATGCTTGCTCGACGATTGACCATA
LOC_Os02g56180
Os.23823.1.S1_at--779--6591Chr02:34363254..34363461 (25 bp)
GATTGACCATACAAGCTGCTGGACT
LOC_Os02g56180
Os.23823.1.S1_at--1036--8511Chr02:34363456..34363480 (25 bp)
TGGACTACGCAACAGAAGCCTTGAT
LOC_Os02g56180
Os.23823.1.S1_at--780--2291Chr02:34363513..34363537 (25 bp)
AAATGTATGGCCTGCCGTTGTGCAA
LOC_Os02g56180
Os.23823.1.S1_at--596--31Chr02:34363653..34363677 (25 bp)
ATTGGTATCTTGTTTGTGCTCTCAC
LOC_Os02g56180
Os.23823.1.S1_at--961--491Chr02:34363679..34363703 (25 bp)
ATCGGAGCCACTTTAAACACTGTAT
LOC_Os02g56180
Os.23823.1.S1_at--964--10231Chr02:34363710..34363734 (25 bp)
TTTGTCCTTTGATCTTGCATGTTGA
LOC_Os02g56180
Os.23823.1.S1_at--1003--611Chr02:34363798..34363822 (25 bp)
ATGCTCTCTCAACCAACGGATCATT
LOC_Os02g56180
Target Sequence 
GTCATTCTGGACAACATCGGTGGATTGTATCTTCAGCGTAACCTGAACAGCTTAGCTGTTGATGGTAGACTTTTCATCAT
TGGTTTCCAAGGAGGCGCTGTAACTGAAGTGAACCTGCAACCCATGCTTGCTCGACGATTGACCATACAAGCTGCTGGAC
TACGCAACAGAAGCCTTGATAATAAAGCTCTGATTGTCAGTGAGGTGGAGAAAAATGTATGGCCTGCCGTTGTGCAAGGC
AAGGTGAAACCAGTAATATACAAGACGTTTCNTCTGTCAGAAGCTGCTGAAGCTCACAAGTTGATGGAAGAAAGTTCCCA
CATTGGCAAGATACTATTGATTCCATGAATGTATTGGTATCTTGTTTGTGCTCTCACTATCGGAGCCACTTTAAACACTG
TATATTTGGTTTGTCCTTTGATCTTGCATGTTGACAAGAGTGGACGTACTATGTCAGAAAATTATGTGTCACAATACATG
AAGAAAGTTATGTACTCATGCTCTCTCAACCAACGGATCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis