Browse Element(s) Details


Os.16248.1.S1_at

Description gb:AK106379.1
DB_XREF= gi:32991588
TID=Os.16248.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D09, full insert sequence.
FL= gb:AK106379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5625011/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56220OsAffx.24889.1.S1_at11/112+34382063..34383695expressed protein
LOC_Os02g56229NANA2+34385019..34386372NA
LOC_Os02g56240NANA2+34388001..34388696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56250Os.16248.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250Os.49555.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250OsAffx.24890.1.S1_at11/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56250Os.16248.2.S1_x_at10/112+34402392..34407536GATA zinc finger family protein, expressed
LOC_Os02g56260OsAffx.31643.1.S1_at11/112+34416285..34419534hypothetical protein
LOC_Os02g56270Os.15975.1.S1_a_at11/112+34422789..34428292ENTH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16248.1.S1_at--770--7151Chr02:34406956..34406980 (25 bp)
GTCTATTGATTAATTGGTTCCCCTT
LOC_Os02g56250
Os.16248.1.S1_at--222--5251Chr02:34407053..34407077 (25 bp)
GAATCACAGTGGTTGTTGCATTGCA
LOC_Os02g56250
Os.16248.1.S1_at--504--5311Chr02:34407111..34407135 (25 bp)
GAAGGAGAGCTAAACCAGCAGCAGA
LOC_Os02g56250
Os.16248.1.S1_at--389--2531Chr02:34407158..34407182 (25 bp)
AACTTTGCAGCTAGTCAGTCAGTCA
LOC_Os02g56250
Os.16248.1.S1_at--112--7491Chr02:34407234..34407258 (25 bp)
GTGGAGTTTGTTGGTTTGCTAATTA
LOC_Os02g56250
Os.16248.1.S1_at--864--5331Chr02:34407259..34407283 (25 bp)
GAAGTTTCTTCTTGCTAGTAGCTAC
LOC_Os02g56250
Os.16248.1.S1_at--553--7631Chr02:34407290..34407314 (25 bp)
GGGACATCCATCATAGTTTATATTG
LOC_Os02g56250
Os.16248.1.S1_at--175--1551Chr02:34407316..34407340 (25 bp)
AGCTTGATGTACTGAACTCCGAAAA
LOC_Os02g56250
Os.16248.1.S1_at--746--2451Chr02:34407338..34407362 (25 bp)
AAAATTCTTTTTGCAGTTCATCTAT
LOC_Os02g56250
Os.16248.1.S1_at--1079--8813Chr12:102247..102343 (24 bp)
TGTTGGTTGGTGGTGCCTCCCTCTG
NONE
Os.16248.1.S1_at--514--9191Chr02:34407476..34407500 (25 bp)
TGCCTCCCTCTGTACAAGTTGTGAT
LOC_Os02g56250
Target Sequence 
GTCTATTGATTAATTGGTTCCCCTTAAAAAGATGATTTTTTGTTTTGTATAGAGGTGGGTGAGAGAGAGAGAGAGGAGGA
GGGCAGGAGAAATAGATGAATCACAGTGGTTGTTGCATTGCAGATTTGCAGTTGCTTGCAAAATTAGGTAGGTGAGAAGG
AGAGCTAAACCAGCAGCAGAGGGAGACAGATTTAGAGAGGAAAACTTTGCAGCTAGTCAGTCAGTCAATTAGGAGGAGGA
AAATGAGATGTGTTTTTTTTAAGGGGGGTGATGAGGANGTGGAGTTTGTTGGTTTGCTAATTAGAAGTTTCTTCTTGCTA
GTAGCTACTCAGGGGGGACATCCATCATAGTTTATATTGGAGCTTGATGTACTGAACTCCGAAAAATTCTTTTTGCAGTT
CATCTATGTCTAGGGATTGATAAGTGTTATTTGGTTTCTATACTAGCAATTACTTTGTAGCAATTAATTATATATCTCTA
TATGCCTTTTTTCTGTTTCTCCTGCCTTGTTGGTTGGTGGTGCCTCCCTCTGTACAAGTTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis