Browse Element(s) Details


Os.38150.1.A1_s_at

Description gb:CB627800
DB_XREF= gi:29622789
DB_XREF=OSIIEb02P15.r
CLONE=OSIIEb02P15
TID=Os.38150.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.38150 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_569025.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g289409/11Golgi-localized GRIP domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28910Os.51194.1.A1_x_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910Os.18659.1.S1_s_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.12663.1.S1_at7/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.11133.1.S1_at1/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28920Os.53096.1.S1_at11/117+16953997..16958742expressed protein
LOC_Os07g28930Os.8135.1.S1_at11/117+16965239..16968267Protein kinase domain containing protein, expressed
LOC_Os07g28930OsAffx.28653.1.S1_x_at9/117+16965239..16968267Protein kinase domain containing protein, expressed
LOC_Os07g28940Os.38150.1.A1_s_at9/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed
LOC_Os07g28940Os.11809.1.S1_at6/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed
LOC_Os07g28960OsAffx.16464.1.S1_at11/117+16987773..16988418hypothetical protein
LOC_Os07g28970Os.24942.4.A1_x_at6/117+16993244..16993959hypothetical protein
LOC_Os07g28970Os.24942.4.A1_at4/117+16993244..16993959hypothetical protein
LOC_Os07g28980OsAffx.31069.5.S1_at2/117+17000046..17005184hypothetical protein
LOC_Os07g28980OsAffx.31069.5.S1_x_at1/117+17000046..17005184hypothetical protein
LOC_Os07g28990OsAffx.16466.1.S1_at11/117+17008084..17008572expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38150.1.A1_s_at--204--4271Chr07:16981015..16981039 (25 bp)
CCTGTGGTTGCAACATTACTGCAAT
LOC_Os07g28940
Os.38150.1.A1_s_at--389--7511Chr07:16981018..16981042 (25 bp)
GTGGTTGCAACATTACTGCAATTTA
LOC_Os07g28940
Os.38150.1.A1_s_at--250--5131Chr07:16981024..16981048 (25 bp)
GCAACATTACTGCAATTTAGCCCCG
LOC_Os07g28940
Os.38150.1.A1_s_at--768--2071Chr07:16981027..16981051 (25 bp)
ACATTACTGCAATTTAGCCCCGAAG
LOC_Os07g28940
Os.38150.1.A1_s_at--109--151Chr07:16981029..16981053 (25 bp)
ATTACTGCAATTTAGCCCCGAAGAG
LOC_Os07g28940
Os.38150.1.A1_s_at--142--10471Chr07:16981030..16981053 (24 bp)
TTACTGCAATTTAGCCCCGAAGAGC
LOC_Os07g28940
Os.38150.1.A1_s_at--291--10351NONE
TTTAGCCCCGAAGAGCTAACGAAAT
NONE
Os.38150.1.A1_s_at--570--4531NONE
GCCCCGAAGAGCTAACGAAATGTCA
NONE
Os.38150.1.A1_s_at--222--9751Chr07:16983123..16983147 (25 bp)
TAATGAAATAGTGGGATCGGCAGAA
LOC_Os07g28940
Os.38150.1.A1_s_at--1094--1091Chr07:16983132..16983156 (25 bp)
AGTGGGATCGGCAGAAATATGTTAT
LOC_Os07g28940
Os.38150.1.A1_s_at--930--7651Chr07:16983135..16983159 (25 bp)
GGGATCGGCAGAAATATGTTATGTA
LOC_Os07g28940
Target Sequence 
CCTGTGGTTGCAACATTACTGCAATTTAGCCCCGAAGAGCTAACGAAATGTCAGCATGGGGTCCTTTCAGCTGTGGTTTC
ATCGCCAGCAACTGCGGTCCCAGACGGTGGATCCCCCCCAAATTCATTTTTTTCAAGATTCCCATTTTAGCAGAGGTACA
TAGATTTGCCATTTTAGCTGGGGGTACCCGGAGAGGATGCTGTTTCCACGAAATCCCAGCGGTTTTTTTGCCCATAGAGG
ATTTTATTTGTTTATTATTTTTAGGTCGCCACTTCCTTTCGTCCCATTTTGTAAAATTAGTGTATATAAAATTATGACCA
TTATAAGCAATTTTATCCCTAAAGTGGAAGGGATAATGAAATAGTGGGATCGGCAGAAATATGTTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38150.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis