Browse Element(s) Details


OsAffx.16463.1.S1_at

Description tigr:9635.m02811
TID=OsAffx.16463.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2890011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28880NANA7+16930487..16930939hypothetical protein
LOC_Os07g28890OsAffx.16462.1.S1_at11/117+16932069..16936913hypothetical protein
LOC_Os07g28900OsAffx.16463.1.S1_at11/117+16940491..16945138pentatricopeptide, putative, expressed
LOC_Os07g28910Os.51194.1.A1_x_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910Os.18659.1.S1_s_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.12663.1.S1_at7/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.11133.1.S1_at1/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28920Os.53096.1.S1_at11/117+16953997..16958742expressed protein
LOC_Os07g28930Os.8135.1.S1_at11/117+16965239..16968267Protein kinase domain containing protein, expressed
LOC_Os07g28930OsAffx.28653.1.S1_x_at9/117+16965239..16968267Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16463.1.S1_at--338--7472Chr12:9571314..9571814 (25 bp)
GTGTGCATGCAATGTTGCCTTCAAA
NONE
OsAffx.16463.1.S1_at--636--9131Chr07:16942640..16942664 (25 bp)
TGCCTTCAAAGTTTATGCGTCCTGT
LOC_Os07g28900
OsAffx.16463.1.S1_at--332--2351Chr07:16942603..16942627 (25 bp)
AAAGCTTTCAGTTTATTCATGCAGA
LOC_Os07g28900
OsAffx.16463.1.S1_at--311--5631Chr07:16942555..16942579 (25 bp)
GACACAGCTACTTACATCCATTTGA
LOC_Os07g28900
OsAffx.16463.1.S1_at--911--2131Chr07:16942366..16942390 (25 bp)
ACAGTTCACTCAATCACCTGATATG
LOC_Os07g28900
OsAffx.16463.1.S1_at--535--8211Chr07:16941652..16941676 (25 bp)
GGAATTCAGAATGCCCATGGCTCCA
LOC_Os07g28900
OsAffx.16463.1.S1_at--122--2871Chr07:16941616..16941640 (25 bp)
AAGTGTTGACAGCTGCCTCATGGAA
LOC_Os07g28900
OsAffx.16463.1.S1_at--730--6491Chr07:16941422..16941446 (25 bp)
GATAGCACTAGTTCATCTTATCGAA
LOC_Os07g28900
OsAffx.16463.1.S1_at--694--2391Chr07:16941389..16941413 (25 bp)
AAACATCCTGGAGAGCACGACTTTG
LOC_Os07g28900
OsAffx.16463.1.S1_at--306--5951Chr07:16941377..16941401 (25 bp)
GAGCACGACTTTGGTGGCGCAGACA
LOC_Os07g28900
OsAffx.16463.1.S1_at--803--5671Chr07:16941356..16941380 (25 bp)
GACATTCTGGAGTGCAATGCTCAAC
LOC_Os07g28900
Target Sequence 
GTGTGCATGCAATGTTGCCTTCAAAGTTTATGCGTCCTGTGGGGAGGTGGATAAAGCTTTCAGTTTATTCATGCAGATGC
ATGAGTTGGGGCTGAAACCGGACACAGCTACTTACATCCATTTGACAACTTGCTATGGGGAATATGGAATGCCGGGAGGG
AAAATGAAAGCAATATTCTTGCTTATCAGTCAGTTAAGAAATGAGATGCTGATACAGTTCACTCAATCACCTGATATGCT
CACAAGGAATTCAGAATGCCCATGGCTCCATGCGAAATGCAAAGTGTTGACAGCTGCCTCATGGAAACTGCAAGTGATCC
AAGGTGATTTTCTGCCAGAAGTTGTTAACATATATGATAGCACTAGTTCATCTTATCGAAAGGCGACAAAACATCCTGGA
GAGCACGACTTTGGTGGCGCAGACATTCTGGAGTGCAATGCTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis