Browse Element(s) Details


OsAffx.16462.1.S1_at

Description tigr:9635.m02810
TID=OsAffx.16462.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2889011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28870OsAffx.16460.1.S1_at11/117+16907539..16908369hypothetical protein
LOC_Os07g28880NANA7+16930487..16930939hypothetical protein
LOC_Os07g28890OsAffx.16462.1.S1_at11/117+16932069..16936913hypothetical protein
LOC_Os07g28900OsAffx.16463.1.S1_at11/117+16940491..16945138pentatricopeptide, putative, expressed
LOC_Os07g28910Os.51194.1.A1_x_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910Os.18659.1.S1_s_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.12663.1.S1_at7/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.11133.1.S1_at1/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28920Os.53096.1.S1_at11/117+16953997..16958742expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16462.1.S1_at--535--7191Chr07:16932773..16932797 (25 bp)
GTCGGACCTGATATCGTTCGGCGGA
LOC_Os07g28890
OsAffx.16462.1.S1_at--1154--971Chr07:16932886..16933226 (25 bp)
AGGAGATCTCGTCCCCAGTGAAGAC
LOC_Os07g28890
OsAffx.16462.1.S1_at--157--9311Chr07:16932897..16933237 (25 bp)
TCCCCAGTGAAGACGAGCAGCAGCG
LOC_Os07g28890
OsAffx.16462.1.S1_at--1031--1451Chr07:16933304..16933328 (25 bp)
AGAAGTCCAAGCATGAGGCCACCTC
LOC_Os07g28890
OsAffx.16462.1.S1_at--346--5111Chr07:16934603..16934627 (25 bp)
GCACTGCAACAGATAGTCTCACCAT
LOC_Os07g28890
OsAffx.16462.1.S1_at--967--2331Chr07:16935042..16935064 (23 bp)
AAAGACTGACACAGCATCGGTGCTA
LOC_Os07g28890
OsAffx.16462.1.S1_at--1091--4971Chr07:16935053..16935077 (25 bp)
GCATCGGTGCTATATGAGGCGATAA
LOC_Os07g28890
OsAffx.16462.1.S1_at--99--1131Chr07:16936299..16936321 (23 bp)
AGTGCAGTTGTTGAGTGACCCATAC
LOC_Os07g28890
OsAffx.16462.1.S1_at--649--7371Chr07:16936311..16936335 (25 bp)
GTGACCCATACATGAAGTCGAGTAG
LOC_Os07g28890
OsAffx.16462.1.S1_at--323--3851Chr07:16936835..16936859 (25 bp)
CTGCACCCCTCAAGTGTACAGAGAT
LOC_Os07g28890
OsAffx.16462.1.S1_at--862--1331Chr07:16936854..16936878 (25 bp)
AGAGATAACAATGGCCCGGACTACT
LOC_Os07g28890
Target Sequence 
GTCGGACCTGATATCGTTCGGCGGAGGCGCGATGGACAAGCCGCCGCCGCCGCCACCGTCGTCAGCGCCGGCGAGGACGT
CGTCGGCGGACTACAAGAAGCAGCAAGGGCAGCAGGAGATCTCGTCCCCAGTGAAGACGAGCAGCAGCGGCGGTGGCGGG
AAGGAGGGGAAGAAGAAGAGGTCGGAGGAGGCGGCAGGGTCGGAGGGGAGCACGAAGAAGTCCAAGCATGAGGCCACCTC
TCCCACCTCTTCTCTCAAAGTACCAAAAGTAAAGTTAGGGGACAAGATCACTGCACTGCAACAGATAGTCTCACCATTTG
GAAAGACTGACACAGCATCGGTGCTATATGAGGCGATAAATTACATTAAGTGGTTGCATGAACAAGTGCAGTTGTTGAGT
GACCCATACATGAAGTCGAGTAGTAGCAAGGATTACAATGCATGGGGAGGGTTGGATAGGAAGGAGAAGGCAGATGCAGA
GGTTGACTTGAGAAGTAGAGGGCTGTGCTTGGTGCCTGTCTCCTGCACCCCTCAAGTGTACAGAGATAACAATGGCCCGG
ACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis