Browse Element(s) Details


OsAffx.16460.1.S1_at

Description tigr:9635.m02808
TID=OsAffx.16460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2887011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28840Os.9542.1.A1_at11/117+16885207..16888668SET domain containing protein, expressed
LOC_Os07g28850OsAffx.28651.1.S1_x_at11/117+16891936..16898511Piwi domain containing protein, expressed
LOC_Os07g28850Os.7338.1.S1_at11/117+16891936..16898511Piwi domain containing protein, expressed
LOC_Os07g28860OsAffx.28652.1.S1_at11/117+16903895..16904599hypothetical protein
LOC_Os07g28870OsAffx.16460.1.S1_at11/117+16907539..16908369hypothetical protein
LOC_Os07g28880NANA7+16930487..16930939hypothetical protein
LOC_Os07g28890OsAffx.16462.1.S1_at11/117+16932069..16936913hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16460.1.S1_at--1050--8351Chr07:16907765..16907789 (25 bp)
GGCGGAGAGGCCACTCACGTGCCCA
LOC_Os07g28870
OsAffx.16460.1.S1_at--614--9151Chr07:16907746..16907770 (25 bp)
TGCCCACGGGTTCACCAACTTGAGA
LOC_Os07g28870
OsAffx.16460.1.S1_at--849--7671Chr07:16907739..16907763 (25 bp)
GGGTTCACCAACTTGAGATACTCTT
LOC_Os07g28870
OsAffx.16460.1.S1_at--1138--6031Chr07:16907725..16907749 (25 bp)
GAGATACTCTTTTTGTTCCCACAAG
LOC_Os07g28870
OsAffx.16460.1.S1_at--530--9551Chr07:16907718..16907742 (25 bp)
TCTTTTTGTTCCCACAAGCCACTAG
LOC_Os07g28870
OsAffx.16460.1.S1_at--961--4411Chr07:16907684..16907708 (25 bp)
GCCAGCTGCCTTTAGCCATGGAAGA
LOC_Os07g28870
OsAffx.16460.1.S1_at--304--8471Chr07:16907617..16907641 (25 bp)
TGGCCCTACTTGTCAGCAGCGTTGG
LOC_Os07g28870
OsAffx.16460.1.S1_at--817--9871Chr07:16907611..16907635 (25 bp)
TACTTGTCAGCAGCGTTGGGTTGAT
LOC_Os07g28870
OsAffx.16460.1.S1_at--145--1231Chr07:16907600..16907624 (25 bp)
AGCGTTGGGTTGATGAAGGCTTCAT
LOC_Os07g28870
OsAffx.16460.1.S1_at--705--3511Chr07:16907578..16907602 (25 bp)
CATGTTAACATTTGTGTCATTCCAA
LOC_Os07g28870
OsAffx.16460.1.S1_at--887--211Chr07:16907569..16907593 (25 bp)
ATTTGTGTCATTCCAAGTCGAACTT
LOC_Os07g28870
Target Sequence 
GGCGGAGAGGCCACTCACGTGCCCACGGGTTCACCAACTTGAGATACTCTTTTTGTTCCCACAAGCCACTAGCCCAGGTC
CGCCAGCTGCCTTTAGCCATGGAAGAAGAGATTGAGGAGGGAGAAGAGAAAAAGAAAGAAAAAATGGCTGGCCCTACTTG
TCAGCAGCGTTGGGTTGATGAAGGCTTCATGTTAACATTTGTGTCATTCCAAGTCGAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis