Browse Element(s) Details


OsAffx.28652.1.S1_at

Description tigr:9635.m02807
TID=OsAffx.28652.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2886011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28840Os.9542.1.A1_at11/117+16885207..16888668SET domain containing protein, expressed
LOC_Os07g28850OsAffx.28651.1.S1_x_at11/117+16891936..16898511Piwi domain containing protein, expressed
LOC_Os07g28850Os.7338.1.S1_at11/117+16891936..16898511Piwi domain containing protein, expressed
LOC_Os07g28860OsAffx.28652.1.S1_at11/117+16903895..16904599hypothetical protein
LOC_Os07g28870OsAffx.16460.1.S1_at11/117+16907539..16908369hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28652.1.S1_at--141--8511Chr07:16904354..16904378 (25 bp)
TGGCAGCCCTCGACGGCGATGTGGC
LOC_Os07g28860
OsAffx.28652.1.S1_at--676--3931Chr07:16904321..16904345 (25 bp)
CGGCGGCGCGTCTGTGAATTTTGAA
LOC_Os07g28860
OsAffx.28652.1.S1_at--625--4571Chr07:16904316..16904340 (25 bp)
GCGCGTCTGTGAATTTTGAATATGC
LOC_Os07g28860
OsAffx.28652.1.S1_at--434--3111Chr07:16904029..16904305 (25 bp)
AATATTCACGAAGTTGCACTTGTCA
LOC_Os07g28860
OsAffx.28652.1.S1_at--1162--9651Chr07:16904024..16904044 (21 bp)
TCACGAAGTTGCACTTGTCAATGGC
LOC_Os07g28860
OsAffx.28652.1.S1_at--279--8731Chr07:16904009..16904033 (25 bp)
TGTCAATGGCATTTTTGGGATTAGA
LOC_Os07g28860
OsAffx.28652.1.S1_at--925--10231Chr07:16903996..16904020 (25 bp)
TTTGGGATTAGAGTGTTTGTCAATG
LOC_Os07g28860
OsAffx.28652.1.S1_at--66--831Chr07:16903964..16903988 (25 bp)
ATGGATTTTCTCTTGTTCTAAAGGG
LOC_Os07g28860
OsAffx.28652.1.S1_at--813--1051Chr07:16903943..16903967 (25 bp)
AGGGTACCCCTCTATAATCCAAATG
LOC_Os07g28860
OsAffx.28652.1.S1_at--458--4291Chr07:16903935..16903959 (25 bp)
CCTCTATAATCCAAATGCCCTCATT
LOC_Os07g28860
OsAffx.28652.1.S1_at--529--4371Chr07:16903925..16903949 (25 bp)
CCAAATGCCCTCATTTTATGACAAG
LOC_Os07g28860
Target Sequence 
TGGCAGCCCTCGACGGCGATGTGGCGCTCCCAGCGGCGGCGCGTCTGTGAATTTTGAATATGCATCAATTCAAAATATTC
ACGAAGTTGCACTTGTCAATGGCATTTTTGGGATTAGAGTGTTTGTCAATGGCATTTTATGGATTTTCTCTTGTTCTAAA
GGGTACCCCTCTATAATCCAAATGCCCTCATTTTATGACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis