Browse Element(s) Details


Os.7338.1.S1_at

Description gb:AK069685.1
DB_XREF= gi:32979709
TID=Os.7338.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030E13, full insert sequence.
FL= gb:AK069685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2885011/11Piwi domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28810OsAffx.16459.1.S1_at11/117+16867599..16868610expressed protein
LOC_Os07g28820Os.427.1.S1_at11/117+16868774..16873661Ribonuclease 2-5A family protein, expressed
LOC_Os07g28830NANA7+16873884..16875314hypothetical protein
LOC_Os07g28840Os.9542.1.A1_at11/117+16885207..16888668SET domain containing protein, expressed
LOC_Os07g28850OsAffx.28651.1.S1_x_at11/117+16891936..16898511Piwi domain containing protein, expressed
LOC_Os07g28850Os.7338.1.S1_at11/117+16891936..16898511Piwi domain containing protein, expressed
LOC_Os07g28860OsAffx.28652.1.S1_at11/117+16903895..16904599hypothetical protein
LOC_Os07g28870OsAffx.16460.1.S1_at11/117+16907539..16908369hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0040034biological_processregulation of development, heterochronic
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7338.1.S1_at--854--731Chr07:16898226..16898250 (25 bp)
ATGTTCTTTTGCTAGTCGTCCTTGT
LOC_Os07g28850
Os.7338.1.S1_at--364--8971Chr07:16898258..16898282 (25 bp)
TGAAACTGAAGCCTGGAGCCAGCCG
LOC_Os07g28850
Os.7338.1.S1_at--73--5871Chr07:16898273..16898297 (25 bp)
GAGCCAGCCGGCAAGCTCTGGAAAT
LOC_Os07g28850
Os.7338.1.S1_at--610--8231Chr07:16898282..16898306 (25 bp)
GGCAAGCTCTGGAAATGCTCTGAAT
LOC_Os07g28850
Os.7338.1.S1_at--431--8191Chr07:16898317..16898341 (25 bp)
GGAAGAATAAGCACCTGCCCAGGTT
LOC_Os07g28850
Os.7338.1.S1_at--720--4331Chr07:16898335..16898359 (25 bp)
CCAGGTTGCCATTCGTTTCCATGTG
LOC_Os07g28850
Os.7338.1.S1_at--538--1851Chr07:16898413..16898437 (25 bp)
ACGACATTGAAGTTTATCTCCGGTG
LOC_Os07g28850
Os.7338.1.S1_at--1099--6811Chr07:16898424..16898448 (25 bp)
GTTTATCTCCGGTGTTACTATCTCA
LOC_Os07g28850
Os.7338.1.S1_at--655--7751Chr07:16898434..16898458 (25 bp)
GGTGTTACTATCTCAGCACTTTGGA
LOC_Os07g28850
Os.7338.1.S1_at--826--3691Chr07:16898441..16898465 (25 bp)
CTATCTCAGCACTTTGGATGTTTTA
LOC_Os07g28850
Os.7338.1.S1_at--1059--6271Chr07:16898457..16898481 (25 bp)
GATGTTTTATTTTGTTATGTCTGAA
LOC_Os07g28850
Target Sequence 
ATGTTCTTTTGCTAGTCGTCCTTGTGCCCCCCTGAAACTGAAGCCTGGAGCCAGCCGGCAAGCTCTGGAAATGCTCTGAA
TAATCAAACTTGGAAGAATAAGCACCTGCCCAGGTTGCCATTCGTTTCCATGTGNCATGGAGGATGGCATCCTGAAAAGG
ATATTGTCATGTTTGTGTGGTTTTTAAACGACATTGAAGTTTATCTCCGGTGTTACTATCTCAGCACTTTGGATGTTTTA
TTTTGTTATGTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis