Browse Element(s) Details


OsAffx.16459.1.S1_at

Description tigr:9635.m02802
TID=OsAffx.16459.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2881011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28780Os.46306.1.S1_x_at3/117+16845108..16848037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28790Os.50313.1.S1_at11/117+16855498..16860933PAP_fibrillin family protein, expressed
LOC_Os07g28800OsAffx.16458.1.S1_at11/117+16861585..16865428DnaJ domain containing protein
LOC_Os07g28810OsAffx.16459.1.S1_at11/117+16867599..16868610expressed protein
LOC_Os07g28820Os.427.1.S1_at11/117+16868774..16873661Ribonuclease 2-5A family protein, expressed
LOC_Os07g28830NANA7+16873884..16875314hypothetical protein
LOC_Os07g28840Os.9542.1.A1_at11/117+16885207..16888668SET domain containing protein, expressed
LOC_Os07g28850OsAffx.28651.1.S1_x_at11/117+16891936..16898511Piwi domain containing protein, expressed
LOC_Os07g28850Os.7338.1.S1_at11/117+16891936..16898511Piwi domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16459.1.S1_at--693--8011Chr07:16868489..16868513 (25 bp)
GGAGGCTAGATTGTCGTTCTTCACC
LOC_Os07g28810
OsAffx.16459.1.S1_at--1091--10511Chr07:16868470..16868494 (25 bp)
TTCACCGAGCTCTTCACGTGTTCTT
LOC_Os07g28810
OsAffx.16459.1.S1_at--396--9591Chr07:16868126..16868154 (25 bp)
TCTTGAGGATGCCTGCACGCAAGTC
LOC_Os07g28810
OsAffx.16459.1.S1_at--941--9691Chr07:16868095..16868119 (25 bp)
TCACAAGTCCGAACGCGCTCGGGAT
LOC_Os07g28810
OsAffx.16459.1.S1_at--932--3951Chr07:16868042..16868066 (25 bp)
CGGAGGACTCGGACCATGCTTGGTC
LOC_Os07g28810
OsAffx.16459.1.S1_at--754--11Chr07:16867893..16867917 (25 bp)
ATTCTGCGAAGTCTCTTTGACCTTT
LOC_Os07g28810
OsAffx.16459.1.S1_at--381--4311Chr07:16867873..16867897 (25 bp)
CCTTTGCGCCGCAGAGGCCAAAAAG
LOC_Os07g28810
OsAffx.16459.1.S1_at--750--7951Chr07:16867829..16867853 (25 bp)
GGATCAAGAAGACAGCTCGGCGCAT
LOC_Os07g28810
OsAffx.16459.1.S1_at--63--5931Chr07:16867779..16867803 (25 bp)
GAGCATTTTCACGTGGATGTCCCTC
LOC_Os07g28810
OsAffx.16459.1.S1_at--575--6371Chr07:16867698..16867722 (25 bp)
GATCCTTTTGCTGGGATACCTTCAG
LOC_Os07g28810
OsAffx.16459.1.S1_at--288--7671Chr07:16867686..16867710 (25 bp)
GGGATACCTTCAGACTATGATTTCT
LOC_Os07g28810
Target Sequence 
GGAGGCTAGATTGTCGTTCTTCACCGAGCTCTTCACGTGTTCTTCGTGTTCTTGAGGATGCCTGCACGCAAGTCCCTCAC
TCACAAGTCCGAACGCGCTCGGGATCGGTCTCCCACTCCTTCTCCATCCTCCGCGGAGGACTCGGACCATGCTTGGTCCG
GGGAAGGGGAAGAGGAGACCGGCCCTCAGGTGGCACGTGTTCCTCGGGGTTCCACTCAGCCTCCTCCCACTCGTGAGCGT
CCCTCTCCTATGGCTCGTCGTGAGCCGTCTCCCTTATTCCGCATTCTGCGAAGTCTCTTTGACCTTTGCGCCGCAGAGGC
CAAAAAGAACCGCAGAATGCGGAATGGGATCAAGAAGACAGCTCGGCGCATCAAGAACATACAGGCACAACTCAATGAGC
ATTTTCACGTGGATGTCCCTCCCTCCCCACCGGGCTTTGAGGCCGAGCCCGATGAGCCTGAGGAGGAAGAGATCGAGGAT
CCTTTTGCTGGGATACCTTCAGACTATGATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis