Browse Element(s) Details


Os.9473.2.S1_at

Description gb:AK062360.1
DB_XREF= gi:32972378
TID=Os.9473.2
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-H04, full insert sequence.
FL= gb:AK111545.1 gb:AK111955.1 gb:AK107074.1 gb:AK062360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5142011/11hypersensitive-induced response protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51380Os.38282.1.S1_at11/115+29376716..29381572expressed protein
LOC_Os05g51380Os.51194.1.A1_x_at1/115+29376716..29381572expressed protein
LOC_Os05g51380Os.18659.1.S1_s_at1/115+29376716..29381572expressed protein
LOC_Os05g51390OsAffx.15193.1.S1_at11/115+29387196..29390727Lysine Decarboxylase, putative, expressed
LOC_Os05g51400OsAffx.15194.1.S1_at11/115+29397661..29401826serine/threonine protein kinase, putative
LOC_Os05g51420Os.9473.2.S1_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.1.S1_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51410OsAffx.15195.1.S1_at11/115+29405111..29409102expressed protein
LOC_Os05g51430OsAffx.15196.1.S1_at11/115+29409666..29410202hypothetical protein
LOC_Os05g51440OsAffx.15197.1.S1_at11/115+29411340..29412432Hsp20/alpha crystallin family protein
LOC_Os05g51450Os.12065.1.S1_at11/115+29412546..29416205ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os05g51460OsAffx.3605.1.S1_at1/115+29419310..29420718retrotransposon protein, putative, LINE subclass
LOC_Os05g51470Os.47949.1.S1_a_at11/115+29423748..29426700expressed protein
LOC_Os05g51480Os.419.1.S1_at11/115+29428627..29436780DNA damage binding protein 1a, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9473.2.S1_at--531--9791Chr05:29408847..29408871 (25 bp)
TAACCATCGATCCAATCCAGACCGA
LOC_Os05g51420
Os.9473.2.S1_at--933--631Chr05:29408678..29408702 (25 bp)
ATGCATCTTTGTCCGCCATGGCCAT
LOC_Os05g51420
Os.9473.2.S1_at--798--8991Chr05:29408643..29408667 (25 bp)
TGAATAAAGGAAGCTTTCTGCTCTC
LOC_Os05g51420
Os.9473.2.S1_at--328--3771Chr05:29408621..29408645 (25 bp)
CTCTACTTCTCCTTCACAGTATGAA
LOC_Os05g51420
Os.9473.2.S1_at--843--2111Chr05:29408606..29408630 (25 bp)
ACAGTATGAAGCTTAATTTCCGACA
LOC_Os05g51420
Os.9473.2.S1_at--21--191Chr05:29408591..29408615 (25 bp)
ATTTCCGACATTTCTTTTTATGGTG
LOC_Os05g51420
Os.9473.2.S1_at--496--2811Chr05:29408565..29408589 (25 bp)
AAGATCTCGGTGTTGTTGTGTTAGC
LOC_Os05g51420
Os.9473.2.S1_at--448--6531Chr05:29408527..29408551 (25 bp)
GATTTCAGGCTTCTCTATGTTTTTT
LOC_Os05g51420
Os.9473.2.S1_at--868--7971Chr05:29408473..29408497 (25 bp)
GGATCCATTTAGTCTTGTTGTGTTC
LOC_Os05g51420
Os.9473.2.S1_at--486--6631Chr05:29408457..29408481 (25 bp)
GTTGTGTTCAATACTTCCATTCTAT
LOC_Os05g51420
Os.9473.2.S1_at--892--7991Chr05:29408424..29408448 (25 bp)
GGATGGGACATATTCACATGGATAT
LOC_Os05g51420
Target Sequence 
TAACCATCGATCCAATCCAGACCGAGTCGCCGTCCGCCGTCCGCCGTCCCGCCTTGCGGCNNCNCNNACCTACACCTTGT
GTCGCGCTCCCTGCCTCCGTCCCGCACGGCGCCGCTCCCTGCCTCCACCCCGTGTCGCGCTCTGCCTCCATCCCGTGCGG
CCGCCGGCCATGCATCTTTGTCCGCCATGGCCATGGAGCAGGAATGAATAAAGGAAGCTTTCTGCTCTCTACTTCTCCTT
CACAGTATGAAGCTTAATTTCCGACATTTCTTTTTATGGTGAAAGATCTCGGTGTTGTTGTGTTAGCCTTTTTATGGGGA
GATTTCAGGCTTCTCTATGTTTTTTAATCTTTTGAAGATTTCTTGGATGGTTTTGGATCCATTTAGTCTTGTTGTGTTCA
ATACTTCCATTCTATGGATGAATGGATGGGACATATTCACATGGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9473.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis