Browse Element(s) Details


OsAffx.15196.1.S1_at

Description tigr:9633.m04854
TID=OsAffx.15196.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5143011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51390OsAffx.15193.1.S1_at11/115+29387196..29390727Lysine Decarboxylase, putative, expressed
LOC_Os05g51400OsAffx.15194.1.S1_at11/115+29397661..29401826serine/threonine protein kinase, putative
LOC_Os05g51420Os.9473.2.S1_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.1.S1_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51410OsAffx.15195.1.S1_at11/115+29405111..29409102expressed protein
LOC_Os05g51430OsAffx.15196.1.S1_at11/115+29409666..29410202hypothetical protein
LOC_Os05g51440OsAffx.15197.1.S1_at11/115+29411340..29412432Hsp20/alpha crystallin family protein
LOC_Os05g51450Os.12065.1.S1_at11/115+29412546..29416205ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os05g51460OsAffx.3605.1.S1_at1/115+29419310..29420718retrotransposon protein, putative, LINE subclass
LOC_Os05g51470Os.47949.1.S1_a_at11/115+29423748..29426700expressed protein
LOC_Os05g51480Os.419.1.S1_at11/115+29428627..29436780DNA damage binding protein 1a, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15196.1.S1_at--275--1191Chr05:29410142..29410166 (25 bp)
AGTATGGAGGCCATCGACAGCTCGA
LOC_Os05g51430
OsAffx.15196.1.S1_at--613--2151Chr05:29410068..29410150 (25 bp)
ACAGCTCGAGCTCAGTGGTCATCAA
LOC_Os05g51430
OsAffx.15196.1.S1_at--909--971Chr05:29409880..29409904 (25 bp)
AGGAGCAGCACGACTTGTGGCAGAT
LOC_Os05g51430
OsAffx.15196.1.S1_at--96--10851Chr05:29409866..29409890 (25 bp)
TTGTGGCAGATCAAGGACCGTCGTC
LOC_Os05g51430
OsAffx.15196.1.S1_at--288--2911Chr05:29409854..29409878 (25 bp)
AAGGACCGTCGTCGCGGAGCTACTT
LOC_Os05g51430
OsAffx.15196.1.S1_at--343--5911Chr05:29409838..29409862 (25 bp)
GAGCTACTTCTATATCCACTGGCAT
LOC_Os05g51430
OsAffx.15196.1.S1_at--1071--8991Chr05:29409792..29409816 (25 bp)
TGAAGTCAAGCACGCCCTGCATCTA
LOC_Os05g51430
OsAffx.15196.1.S1_at--932--5791Chr05:29409762..29409786 (25 bp)
GACGCTCACCCACAATACGGAGAGG
LOC_Os05g51430
OsAffx.15196.1.S1_at--775--2231Chr05:29409751..29409775 (25 bp)
ACAATACGGAGAGGAGGCACACCCT
LOC_Os05g51430
OsAffx.15196.1.S1_at--29--6211Chr05:29409738..29409762 (25 bp)
GAGGCACACCCTCATCAACCTAAAT
LOC_Os05g51430
OsAffx.15196.1.S1_at--654--3251Chr05:29409723..29409747 (25 bp)
CAACCTAAATCTAATGTCGAGCAAT
LOC_Os05g51430
Target Sequence 
AGTATGGAGGCCATCGACAGCTCGAGCTCAGTGGTCATCAAGGAGGATGAGGACGATACGGTGGAGCACGATGATGGGTT
TAAGCGGAGAGCAGTTTGTGGTGGCAGCAGTAGCGCGGCAGGGGGTGGAGGCTGGAAGGTGTGGCGCGGGGAGGAGCAGC
ACGACTTGTGGCAGATCAAGGACCGTCGTCGCGGAGCTACTTCTATATCCACTGGCATCGTCGTCAGGCCACCTTCCCCT
GAAGTCAAGCACGCCCTGCATCTAGACACGACGCTCACCCACAATACGGAGAGGAGGCACACCCTCATCAACCTAAATCT
AATGTCGAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis