Browse Element(s) Details


Os.419.1.S1_at

Description gb:AB037144.1
DB_XREF= gi:12082086
GEN=OsUV-DDB
TID=Os.419.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.419 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsUV-DDB mRNA for UV-damaged DNA binding protein, complete cds.
PROD=UV-damaged DNA binding protein
FL= gb:AK059736.1 gb:AB037144.1 gb:AK065508.1 gb:AK104782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5148011/11DNA damage binding protein 1a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51420Os.9473.2.S1_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.1.S1_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51410OsAffx.15195.1.S1_at11/115+29405111..29409102expressed protein
LOC_Os05g51430OsAffx.15196.1.S1_at11/115+29409666..29410202hypothetical protein
LOC_Os05g51440OsAffx.15197.1.S1_at11/115+29411340..29412432Hsp20/alpha crystallin family protein
LOC_Os05g51450Os.12065.1.S1_at11/115+29412546..29416205ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os05g51460OsAffx.3605.1.S1_at1/115+29419310..29420718retrotransposon protein, putative, LINE subclass
LOC_Os05g51470Os.47949.1.S1_a_at11/115+29423748..29426700expressed protein
LOC_Os05g51480Os.419.1.S1_at11/115+29428627..29436780DNA damage binding protein 1a, putative, expressed
LOC_Os05g51490Os.22562.1.S1_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51490OsAffx.27405.1.S1_x_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51500Os.12337.2.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.56152.1.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.12337.1.S1_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500OsAffx.29835.1.S1_x_at1/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51510Os.52518.1.S1_at10/115+29455174..29458747Protein phosphatase 2C ABI2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010100biological_processnegative regulation of photomorphogenesis
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003684molecular_functiondamaged DNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.419.1.S1_at--901--8531Chr05:29436351..29436375 (25 bp)
TGGAGGAGCTGACTAGATTGCACTA
LOC_Os05g51480
Os.419.1.S1_at--477--6591Chr05:29436366..29436390 (25 bp)
GATTGCACTAGGTCTCGATAATGAT
LOC_Os05g51480
Os.419.1.S1_at--157--291Chr05:29436401..29436425 (25 bp)
ATACGTAGAAGATGTTTGCTGGAAC
LOC_Os05g51480
Os.419.1.S1_at--1103--6271Chr05:29436411..29436435 (25 bp)
GATGTTTGCTGGAACTTATTTCTGA
LOC_Os05g51480
Os.419.1.S1_at--959--10491Chr05:29436466..29436490 (25 bp)
TTAAGCATGTGTTGGTGGGTTGAAT
LOC_Os05g51480
Os.419.1.S1_at--910--2691Chr05:29436517..29436541 (25 bp)
AAGCATTCCTGTTAAGAAGAGTTAC
LOC_Os05g51480
Os.419.1.S1_at--1060--6051Chr05:29436535..29436559 (25 bp)
GAGTTACTAAGTTACCCATGTGGTT
LOC_Os05g51480
Os.419.1.S1_at--855--4331Chr05:29436550..29436574 (25 bp)
CCATGTGGTTCGGTTGTAGATTTTA
LOC_Os05g51480
Os.419.1.S1_at--472--8551Chr05:29436590..29436614 (25 bp)
TGGATGGTCCAGTAATTAACGTTTG
LOC_Os05g51480
Os.419.1.S1_at--868--131Chr05:29436604..29436628 (25 bp)
ATTAACGTTTGAGCTGCCAGTTTTA
LOC_Os05g51480
Os.419.1.S1_at--1091--4411Chr05:29436619..29436643 (25 bp)
GCCAGTTTTAAGATGTACTCCTAGT
LOC_Os05g51480
Target Sequence 
TGGAGGAGCTGACTAGATTGCACTAGGTCTCGATAATGATGATATAATTAATACGTAGAAGATGTTTGCTGGAACTTATT
TCTGAAATGTATATNTTTTTTTTCTACTCCNGTTTATTAAGCATGTGTTGGTGGGTTGAATGTTGATGCCNGCNTGGTGG
CACNANGGAAGAAGCATTCCTGTTAAGAAGAGTTACTAAGTTACCCATGTGGTTCGGTTGTAGATTTTACTCTGTTTTGT
TGGTTGGATGGTCCAGTAATTAACGTTTGAGCTGCCAGTTTTAAGATGTACTCCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis