Browse Element(s) Details


OsAffx.3605.1.S1_at

Description tigr:9631.m05305
TID=OsAffx.3605.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5401011/11hypothetical protein
LOC_Os05g514601/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53960Os.14500.1.S2_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53960Os.14500.1.S1_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53970OsAffx.13484.1.S1_at10/113+30894059..30896475expressed protein
LOC_Os03g53980Os.22981.1.S1_at10/113+30900124..30901173expressed protein
LOC_Os03g53990OsAffx.25709.1.S1_at11/113+30904911..30909769expressed protein
LOC_Os03g54000Os.4978.1.S1_at11/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54000Os.4978.1.S2_at10/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54010OsAffx.3605.1.S1_at11/113+30915505..30916265hypothetical protein
LOC_Os03g54020Os.14491.2.S1_x_at3/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020Os.47463.1.S1_x_at2/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020OsAffx.8135.1.S1_at1/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54030NANA3+30923857..30928424transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g54040Os.20521.1.S1_at11/113+30931465..3093502750S ribosomal protein L6, putative, expressed
LOC_Os03g54050OsAffx.3606.1.S1_s_at11/113+30940306..30942347heavy metal-associated domain containing protein, expressed
LOC_Os03g54050Os.32126.1.S1_x_at11/113+30940306..30942347heavy metal-associated domain containing protein, expressed
LOC_Os03g54050Os.32126.2.S1_at11/113+30940306..30942347heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3605.1.S1_at--426--5373Chr07:28295228..28295354 (25 bp)
GAAGACGCTTTCTATGGGCCGGCAC
NONE
OsAffx.3605.1.S1_at--1078--10811Chr03:30915944..30915968 (25 bp)
TTGGTCTCGATACACCTTGTGACGA
LOC_Os03g54010
OsAffx.3605.1.S1_at--1056--6692Chr09:14905955..14905979 (25 bp)
GTTCGCCGCCTCAACAGAAATAACA
NONE
OsAffx.3605.1.S1_at--335--831Chr03:30915872..30915896 (25 bp)
ATGGAAACACGGCACGCTTCTGGAG
LOC_Os03g54010
OsAffx.3605.1.S1_at--582--4911Chr03:30915857..30915881 (25 bp)
GCTTCTGGAGCTCTGCCTGGATAGA
LOC_Os03g54010
OsAffx.3605.1.S1_at--857--3751Chr03:30915813..30915837 (25 bp)
CTCATGCCACTAGTCTATGCGATTT
LOC_Os03g54010
OsAffx.3605.1.S1_at--588--2591Chr03:30915709..30915733 (25 bp)
AACGATCACAGTCAGCCTCATTGAG
LOC_Os03g54010
OsAffx.3605.1.S1_at--562--10771Chr03:30915689..30915713 (25 bp)
TTGAGCAGCTAGTCGCCCTGTGGGA
LOC_Os03g54010
OsAffx.3605.1.S1_at--518--9991Chr03:30915644..30915668 (25 bp)
TAGCCAATGGCGAACCGGATCAGAT
LOC_Os03g54010
OsAffx.3605.1.S1_at--744--8131Chr03:30915614..30915638 (25 bp)
GGAAATTCACCAGCAACGGGCGATA
LOC_Os03g54010
OsAffx.3605.1.S1_at--767--2671Chr03:30915569..30915593 (25 bp)
AAGCGCAGTGCTATGGGACACCTAA
LOC_Os03g54010
Target Sequence 
GAAGACGCTTTCTATGGGCCGGCACGGAAGGTATTACCGGGGAAAATGTTAGGGCCTTGAGGTTGAGGTGGCTCTGGCAC
AAGTGGAAAGACCCGACCAAACCATGGGTTGGTCTCGATACACCTTGTGACGAAATTGACAGAGACCTGTTCGCCGCCTC
AACAGAAATAACAGTGGGTGATGGAAACACGGCACGCTTCTGGAGCTCTGCCTGGATAGATGGGCGTCGCCCTAAAGACC
TCATGCCACTAGTCTATGCGATTTCCAAAAACAGAAAGAAAACTCTGCGACAAGGAAAAGAGGGTGACGCTTGGATAAAA
GATCTGACCATACATACGCAGTCAACGATCACAGTCAGCCTCATTGAGCAGCTAGTCGCCCTGTGGGAAGCAGTTCGGAA
TGTGCAATTAGCCAATGGCGAACCGGATCAGATCGCTTGGAAATTCACCAGCAACGGGCGATACGCGTCATCTTCAGCCT
ACCAAGCGCAGTGCTATGGGACACCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis