Browse Element(s) Details


Os.4978.1.S1_at

Description gb:BU673383
DB_XREF= gi:23513937
DB_XREF=NL_14_70
CLONE=NL_14_70
TID=Os.4978.1
CNT=27
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.4978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 30870 Isp-4-like protein mRNA, partial cds
FL= gb:AK071293.1 gb:AK102404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5400011/11oligopeptide transporter 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53960Os.14500.1.S2_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53960Os.14500.1.S1_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53970OsAffx.13484.1.S1_at10/113+30894059..30896475expressed protein
LOC_Os03g53980Os.22981.1.S1_at10/113+30900124..30901173expressed protein
LOC_Os03g53990OsAffx.25709.1.S1_at11/113+30904911..30909769expressed protein
LOC_Os03g54000Os.4978.1.S1_at11/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54000Os.4978.1.S2_at10/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54010OsAffx.3605.1.S1_at11/113+30915505..30916265hypothetical protein
LOC_Os03g54020Os.14491.2.S1_x_at3/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020Os.47463.1.S1_x_at2/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020OsAffx.8135.1.S1_at1/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54030NANA3+30923857..30928424transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g54040Os.20521.1.S1_at11/113+30931465..3093502750S ribosomal protein L6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0015198molecular_functionoligopeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4978.1.S1_at--841--5551Chr03:30914078..30914102 (25 bp)
GAAAGCGTTACTACCTTCCTCTCCA
LOC_Os03g54000
Os.4978.1.S1_at--1155--1731Chr03:30914066..30914090 (25 bp)
ACCTTCCTCTCCAGATACTGGCAAA
LOC_Os03g54000
Os.4978.1.S1_at--166--6471Chr03:30914053..30914077 (25 bp)
GATACTGGCAAATTATTTTCTTTAC
LOC_Os03g54000
Os.4978.1.S1_at--108--10331Chr03:30914037..30914061 (25 bp)
TTTCTTTACAAATCATTCGCAGCTA
LOC_Os03g54000
Os.4978.1.S1_at--956--3291Chr03:30914029..30914053 (25 bp)
CAAATCATTCGCAGCTAGCTTAGCT
LOC_Os03g54000
Os.4978.1.S1_at--348--10011Chr03:30914014..30914038 (25 bp)
TAGCTTAGCTCGCTTTGCTTGTAGT
LOC_Os03g54000
Os.4978.1.S1_at--579--1591Chr03:30914008..30914032 (25 bp)
AGCTCGCTTTGCTTGTAGTGGCGAC
LOC_Os03g54000
Os.4978.1.S1_at--115--3691Chr03:30914002..30914026 (25 bp)
CTTTGCTTGTAGTGGCGACTTGTGA
LOC_Os03g54000
Os.4978.1.S1_at--658--1311Chr03:30913947..30913971 (25 bp)
AGATGGCGTCGTTGAAGTCGCCGGT
LOC_Os03g54000
Os.4978.1.S1_at--517--7171Chr03:30913834..30913858 (25 bp)
GTGCCGGAGACCGACGACCCGACGA
LOC_Os03g54000
Os.4978.1.S1_at--60--1831Chr03:30913810..30913834 (25 bp)
ACGCCGGTGATGACATTCCGGGCGT
LOC_Os03g54000
Target Sequence 
GAAAGCGTTACTACCTTCCTCTCCAGATACTGGCAAATTATTTTCTTTACAAATCATTCGCAGCTAGCTTAGCTCGCTTT
GCTTGTAGTGGCGACTTGTGAGGCGGAGGAGGAAGGAGATCGAGGCTAGGGAGATGGCGTCGTTGAAGTCGCCGGTGGCG
GCGGAGGAGCAGGCGGCGACGGCGGCGGCGGCGGCGGCGGCGAAGGGGGAAGGGGAGAGGTGCCCGGTGGAGGAGGTGGC
GCTGGTGGTGCCGGAGACCGACGACCCGACGACGCCGGTGATGACATTCCGGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis