Browse Element(s) Details


OsAffx.13484.1.S1_at

Description tigr:9631.m05301
TID=OsAffx.13484.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5397010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53920OsAffx.25707.1.S1_at11/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53920OsAffx.21469.1.S1_at1/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53930OsAffx.30531.1.S1_x_at2/113+30871401..30871904hypothetical protein
LOC_Os03g53939NANA3+30876526..30876679NA
LOC_Os03g53950Os.18627.1.S1_at10/113+30877679..30880133Strictosidine synthase family protein, expressed
LOC_Os03g53960Os.14500.1.S2_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53960Os.14500.1.S1_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53970OsAffx.13484.1.S1_at10/113+30894059..30896475expressed protein
LOC_Os03g53980Os.22981.1.S1_at10/113+30900124..30901173expressed protein
LOC_Os03g53990OsAffx.25709.1.S1_at11/113+30904911..30909769expressed protein
LOC_Os03g54000Os.4978.1.S1_at11/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54000Os.4978.1.S2_at10/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54010OsAffx.3605.1.S1_at11/113+30915505..30916265hypothetical protein
LOC_Os03g54020Os.14491.2.S1_x_at3/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020Os.47463.1.S1_x_at2/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020OsAffx.8135.1.S1_at1/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13484.1.S1_at--737--7991Chr03:30895673..30895697 (25 bp)
GGATGAGATCTCCACGCTCACGGGA
LOC_Os03g53970
OsAffx.13484.1.S1_at--744--5651Chr03:30895650..30895674 (25 bp)
GACAGATCCAATGCCTTGCCGAAGA
LOC_Os03g53970
OsAffx.13484.1.S1_at--128--5911Chr03:30895532..30895651 (25 bp)
GAGCTCGCGCAGGTTAAGGCCGATA
LOC_Os03g53970
OsAffx.13484.1.S1_at--1149--2171Chr03:30895506..30895530 (25 bp)
ACACACGCCAAGGTCATGTTTTGAT
LOC_Os03g53970
OsAffx.13484.1.S1_at--172--8871Chr03:30895482..30895506 (25 bp)
TGATGAATACTGCTCTTCCCCAAGA
LOC_Os03g53970
OsAffx.13484.1.S1_at--145--1411NONE
AGACTGCTTTCTCTCTGGAATGTAG
NONE
OsAffx.13484.1.S1_at--1063--991Chr03:30894423..30894447 (25 bp)
AGGATCTTAATCCTTGCCTAACTCC
LOC_Os03g53970
OsAffx.13484.1.S1_at--953--8031Chr03:30894221..30894245 (25 bp)
GGAGTACGAGCAACCGATCAATTCT
LOC_Os03g53970
OsAffx.13484.1.S1_at--918--6451Chr03:30894206..30894230 (25 bp)
GATCAATTCTCATCGCAGCGGCACG
LOC_Os03g53970
OsAffx.13484.1.S1_at--289--6711Chr03:30894153..30894177 (25 bp)
GTTCCCGTAGCAGGCCAATGTCGAA
LOC_Os03g53970
OsAffx.13484.1.S1_at--139--1371Chr03:30894129..30894153 (25 bp)
AGAGCTCTGATCATCACAAGCCTAC
LOC_Os03g53970
Target Sequence 
GGATGAGATCTCCACGCTCACGGGACAGATCCAATGCCTTGCCGAAGAGCTCGCGCAGGTTAAGGCCGATAAACACACGC
CAAGGTCATGTTTTGATGATGAATACTGCTCTTCCCCAAGAACACCGGTGCTTAATGAGGAGACTGCTTTCTCTCTGGAA
TGTAGCATTGGAGAAGATGACACACCAAACTACGGTAGTCCAGATGAAATGTTCAGCAAGGATCTTAATCCTTGCCTAAC
TCCATGCATCTCCAAGAGTAAATCCGAGGAGTACGAGCAACCGATCAATTCTCATCGCAGCGGCACGAAGGCCGGACAGG
ACAGCCTCTCCTGCGGTTCCCGTAGCAGGCCAATGTCGAAGAGCTCTGATCATCACAAGCCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis