Browse Element(s) Details


Os.4978.1.S2_at

Description gb:AK102404.1
DB_XREF= gi:32987613
TID=Os.4978.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 30870 Isp-4-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092K11, full insert sequence.
FL= gb:AK071293.1 gb:AK102404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5400010/11oligopeptide transporter 3, putative, expressed
LOC_Os07g229501/11Adenylate kinase isoenzyme 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53960Os.14500.1.S2_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53960Os.14500.1.S1_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53970OsAffx.13484.1.S1_at10/113+30894059..30896475expressed protein
LOC_Os03g53980Os.22981.1.S1_at10/113+30900124..30901173expressed protein
LOC_Os03g53990OsAffx.25709.1.S1_at11/113+30904911..30909769expressed protein
LOC_Os03g54000Os.4978.1.S1_at11/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54000Os.4978.1.S2_at10/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54010OsAffx.3605.1.S1_at11/113+30915505..30916265hypothetical protein
LOC_Os03g54020Os.14491.2.S1_x_at3/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020Os.47463.1.S1_x_at2/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020OsAffx.8135.1.S1_at1/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54030NANA3+30923857..30928424transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g54040Os.20521.1.S1_at11/113+30931465..3093502750S ribosomal protein L6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0008152biological_processmetabolism
GO:0016020cellular_componentmembrane
GO:0015198molecular_functionoligopeptide transporter activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4978.1.S2_at--137--1451Chr03:30910514..30910538 (25 bp)
AGAACGCCCACCATGAGCTCAAGTG
LOC_Os03g54000
Os.4978.1.S2_at--408--2891Chr03:30910425..30910449 (25 bp)
AAGGGATGCCCGGTGTTCTGAGCTC
LOC_Os03g54000
Os.4978.1.S2_at--435--3291Chr03:30910386..30910410 (25 bp)
CACACGGTGGTGTATGTAGGTAGCA
LOC_Os03g54000
Os.4978.1.S2_at--662--7431Chr03:30910318..30910342 (25 bp)
GTGTCAGTTAACTGATACAGTCCTA
LOC_Os03g54000
Os.4978.1.S2_at--936--3731Chr03:30910296..30910320 (25 bp)
CTAATAGTTGTCAGCTGTTACCTCC
LOC_Os03g54000
Os.4978.1.S2_at--799--6432Chr07:12925583..12925836 (25 bp)
GATCATGCCATTCTGGAATATGCTG
LOC_Os07g22950
Os.4978.1.S2_at--81--431Chr03:30910157..30910181 (25 bp)
ATCATCAGAGAATCCGCAATTACGG
LOC_Os03g54000
Os.4978.1.S2_at--370--531Chr03:30910118..30910142 (25 bp)
ATGTAAAAGCACACCATTGACAGAA
LOC_Os03g54000
Os.4978.1.S2_at--168--5551Chr03:30910082..30910106 (25 bp)
GAAACTGAAGTTGCACTCAGGTAGC
LOC_Os03g54000
Os.4978.1.S2_at--363--3331Chr03:30910069..30910093 (25 bp)
CACTCAGGTAGCAAGCATTTGGGTT
LOC_Os03g54000
Os.4978.1.S2_at--39--8551NONE
TGGGAAAAACCCATGAATTCATTTT
NONE
Target Sequence 
AGAACGCCCACCATGAGCTCAAGTGGTGGGGCACGGCGGTCGACCACTGCCCGCTCGCCTCCTGCCCCACCGCGCCGGGG
ATCGCCGTCAAGGGATGCCCGGTGTTCTGAGCTCGCCGGCCGGAGCTGCACACGGTGGTGTATGTAGGTAGCAAGAATTT
GGGTTTGGATTGGGGAAAAACCATGAATTCAGCCTGGTGTCAGTTAACTGATACAGTCCTAATAGTTGTCAGCTGTTACC
TCCCGTGTGATGAGTGTAACAAATTGGCTTCCTGCAAGGAAATGATATAGTAGCTAGTAGTTCATATAAGATCATGCCAT
TCTGGAATATGCTGAAACAGAGATGTGATGGTAGTTAATCATCAGAGAATCCGCAATTACGGAGCAAAGATGAAAAATGT
AAAAGCACACCATTGACAGAAGCAGAGTGATAGAAACTGAAGTTGCACTCAGGTAGCAAGCATTTGGGTTAGGGTTGGGA
AAAACCCATGAATTCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4978.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis