Browse Element(s) Details


Os.22981.1.S1_at

Description gb:AK062777.1
DB_XREF= gi:32972795
TID=Os.22981.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.22981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A10, full insert sequence.
FL= gb:AK062777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5398010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53939NANA3+30876526..30876679NA
LOC_Os03g53950Os.18627.1.S1_at10/113+30877679..30880133Strictosidine synthase family protein, expressed
LOC_Os03g53960Os.14500.1.S2_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53960Os.14500.1.S1_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53970OsAffx.13484.1.S1_at10/113+30894059..30896475expressed protein
LOC_Os03g53980Os.22981.1.S1_at10/113+30900124..30901173expressed protein
LOC_Os03g53990OsAffx.25709.1.S1_at11/113+30904911..30909769expressed protein
LOC_Os03g54000Os.4978.1.S1_at11/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54000Os.4978.1.S2_at10/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54010OsAffx.3605.1.S1_at11/113+30915505..30916265hypothetical protein
LOC_Os03g54020Os.14491.2.S1_x_at3/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020Os.47463.1.S1_x_at2/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020OsAffx.8135.1.S1_at1/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54030NANA3+30923857..30928424transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22981.1.S1_at--516--671Chr03:30900241..30900265 (25 bp)
ATGAAAGATCCGAGCCTGTGGCACA
LOC_Os03g53980
Os.22981.1.S1_at--438--10851Chr03:30900390..30900414 (25 bp)
TTGGACTTGGCACCTATGGCGCGCA
LOC_Os03g53980
Os.22981.1.S1_at--334--2911Chr03:30900563..30900583 (21 bp)
AAGGAGGTTTGGCACACTGCGTCCC
LOC_Os03g53980
Os.22981.1.S1_at--184--1091Chr03:30900732..30900756 (25 bp)
AGGGCTTCTTACTGCTGGGATTGTT
LOC_Os03g53980
Os.22981.1.S1_at--216--6591NONE
GATTGTTCTCTTCTCTGGAACGTGC
NONE
Os.22981.1.S1_at--992--5451Chr03:30900918..30900938 (21 bp)
GAACGTGCTACACTGTGGCTTATCT
LOC_Os03g53980
Os.22981.1.S1_at--38--1151Chr03:30901003..30901027 (25 bp)
AGTCTGCTCTTCTGATTATATCGTG
LOC_Os03g53980
Os.22981.1.S1_at--371--5271Chr03:30901058..30901082 (25 bp)
GAATGCTTTGTATTTGGTGCCCTAT
LOC_Os03g53980
Os.22981.1.S1_at--439--7791Chr03:30901073..30901097 (25 bp)
GGTGCCCTATCAGTTCATGCAATTG
LOC_Os03g53980
Os.22981.1.S1_at--1014--3171Chr03:30901092..30901116 (25 bp)
CAATTGACTCGTATGCATCTCTATC
LOC_Os03g53980
Os.22981.1.S1_at--61--651Chr03:30901104..30901128 (25 bp)
ATGCATCTCTATCATGACCTTCTAG
LOC_Os03g53980
Target Sequence 
ATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATATCCGGGGTTGCTGCCCTTGGACTTGGCACCTATGGCGCGCA
CATGTTCCGCCCCAAGAACCCCGCGTACAAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCNCGGCGT
TGCTCGGGGCTCCCATCACCAAGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGGATTGTTCTCTTCTCTGGAACG
TGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTG
GGCCAGTCTGCTCTTCTGATTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCC
CTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis