Browse Element(s) Details


Os.18627.1.S1_at

Description gb:AK111876.1
DB_XREF= gi:37988539
TID=Os.18627.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046K17, full insert sequence.
FL= gb:AK099001.1 gb:AK111876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5395010/11Strictosidine synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53900Os.15989.1.S1_at11/113+30852224..30853439universal stress protein family protein, expressed
LOC_Os03g53910Os.38031.2.A1_at11/113+30854342..30857514TPR Domain containing protein, expressed
LOC_Os03g53920OsAffx.25707.1.S1_at11/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53920OsAffx.21469.1.S1_at1/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53930OsAffx.30531.1.S1_x_at2/113+30871401..30871904hypothetical protein
LOC_Os03g53939NANA3+30876526..30876679NA
LOC_Os03g53950Os.18627.1.S1_at10/113+30877679..30880133Strictosidine synthase family protein, expressed
LOC_Os03g53960Os.14500.1.S2_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53960Os.14500.1.S1_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53970OsAffx.13484.1.S1_at10/113+30894059..30896475expressed protein
LOC_Os03g53980Os.22981.1.S1_at10/113+30900124..30901173expressed protein
LOC_Os03g53990OsAffx.25709.1.S1_at11/113+30904911..30909769expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009821biological_processalkaloid biosynthesis
GO:0016844molecular_functionstrictosidine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18627.1.S1_at--906--1471Chr03:30878230..30878254 (25 bp)
AGCAATCCATTGCAGGCGCAGCATA
LOC_Os03g53950
Os.18627.1.S1_at--50--10171Chr03:30878207..30878231 (25 bp)
TATACGCCCGAATGGTCAGTCGCAA
LOC_Os03g53950
Os.18627.1.S1_at--929--4371Chr03:30878141..30878165 (25 bp)
CCAAGTACCACTACCTGATGCAGAT
LOC_Os03g53950
Os.18627.1.S1_at--605--1591Chr03:30878108..30878132 (25 bp)
AGCTCCACGCTCTGATCATCAAGTA
LOC_Os03g53950
Os.18627.1.S1_at--690--71Chr03:30877962..30877986 (25 bp)
ATTGCCGTCTTCGATTACGCCAATG
LOC_Os03g53950
Os.18627.1.S1_at--30--551Chr03:30877892..30877916 (25 bp)
ATCCCAGAATGACGTTTGCACACCA
LOC_Os03g53950
Os.18627.1.S1_at--263--3331Chr03:30877862..30877886 (25 bp)
CACTATCCCGGGTGACATTTCATAA
LOC_Os03g53950
Os.18627.1.S1_at--530--3011Chr03:30877838..30877862 (25 bp)
AATGCCGCTTTCAAGTAACAACCTA
LOC_Os03g53950
Os.18627.1.S1_at--1107--9591Chr03:30877757..30877781 (25 bp)
TCATTTTCACAGTCCATGACTCCAT
LOC_Os03g53950
Os.18627.1.S1_at--288--7291Chr03:30877723..30877747 (25 bp)
GTGCCTTCTTATTGCGCTCGATAAT
LOC_Os03g53950
Os.18627.1.S1_at--326--8851Chr03:30877678..30877698 (21 bp)
TGATCCGGTGCAGTCTGTTCAAAAA
NONE
Target Sequence 
AGCAATCCATTGCAGGCGCAGCATATACGCCCGAATGGTCAGTCGCAATGTCAGGCTGAGGAAGTTCTTGCTCAGCCTCC
CNAATCCCTNCCAAGTACCACTACCTGATGCAGATNGGCGGCAAGCTCCACGCTCTGATCATCAAGTACANCCCCGAAGG
CGAGGTGCTTGACATCTTGGAGGATACCACAGGGCAGGTGGTAAGAGCCGTTAGTGAAGTTGAGGAGAAGGATGGNAAGC
TCTGGATAGGATCCGTTNTGATGCCCTTCATTGCCGTCTTCGATTACGCCAATGCATCTTAGCAAACTTTATGCCTGGAT
ACAAGGGTTAAAATGTGGAATCCCAGAATGACGTTTGCACACCATTTACCACTATCCCGGGTGACATTTCATAAATGCCG
CTTTCAAGTAACAACCTAAGTTGTTTCATGTTTCAGTTTTTTCGAAGCAGATGTAGCTTGCTTACATTTTTAGTTCATTT
TCACAGTCCATGACTCCATGTTCGTTTGGTGCCTTCTTATTGCGCTCGATAATAATTTGTGAAATTGCCGGATTCTNTGA
TCCGGTGCAGTCTGTTCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis