Browse Element(s) Details


OsAffx.21469.1.S1_at

Description gb:NM_192257.1
DB_XREF= gi:34911597
GEN=P0004A09.24
TID=OsAffx.21469.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0004A09.24 (P0004A09.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g539201/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53860Os.11437.1.S1_at11/113+30833538..30838364Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53880Os.27760.2.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53880Os.27760.1.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53890Os.10465.1.S1_at11/113+30850479..30852178expressed protein
LOC_Os03g53900Os.15989.1.S1_at11/113+30852224..30853439universal stress protein family protein, expressed
LOC_Os03g53910Os.38031.2.A1_at11/113+30854342..30857514TPR Domain containing protein, expressed
LOC_Os03g53920OsAffx.25707.1.S1_at11/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53920OsAffx.21469.1.S1_at1/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53930OsAffx.30531.1.S1_x_at2/113+30871401..30871904hypothetical protein
LOC_Os03g53939NANA3+30876526..30876679NA
LOC_Os03g53950Os.18627.1.S1_at10/113+30877679..30880133Strictosidine synthase family protein, expressed
LOC_Os03g53960Os.14500.1.S2_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53960Os.14500.1.S1_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53970OsAffx.13484.1.S1_at10/113+30894059..30896475expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21469.1.S1_at--161--2531Chr01:26006795..26006819 (25 bp)
AACTTCATCACACAATTGCCGAAAA
NONE
OsAffx.21469.1.S1_at--957--4831NONE
GCTAGAAGAGAATCTCCAGGTCCCC
NONE
OsAffx.21469.1.S1_at--93--3291Chr01:26007664..26007688 (25 bp)
CAAACAGTCCAGATTGCCACTCAAA
NONE
OsAffx.21469.1.S1_at--484--7271Chr01:26007670..26007694 (25 bp)
GTCCAGATTGCCACTCAAATTTTGA
NONE
OsAffx.21469.1.S1_at--47--1312Chr06:26135408..26135427 (20 bp)
GAGAGTCCAAAAGCTGAAAAACCCA
NONE
OsAffx.21469.1.S1_at--395--2432Chr03:30866709..30866734 (25 bp)
AAAACCCAGCTTTCTAGATTCTCAG
LOC_Os03g53920
OsAffx.21469.1.S1_at--947--5332Chr01:26007734..26007758 (25 bp)
GAAGTTAGCTACCAACCAGCGGATT
NONE
OsAffx.21469.1.S1_at--381--1631Chr01:26007751..26007775 (25 bp)
AGCGGATTCTCAGAATCTTCCCCAA
NONE
OsAffx.21469.1.S1_at--663--431Chr01:26007765..26007789 (25 bp)
ATCTTCCCCAACCTAGGCCTTAGAG
NONE
OsAffx.21469.1.S1_at--576--8431Chr01:26007780..26007804 (25 bp)
GGCCTTAGAGGCATCGAGGATGATT
NONE
OsAffx.21469.1.S1_at--133--6291Chr01:26007798..26007822 (25 bp)
GATGATTGCATTTTGGAGTTGTTCC
NONE
Target Sequence 
AACTTCATCACACAATTGCCGAAAATGATTCTGATGAAGCATGCTAGAAGAGAATCTCCAGGTCCCCCAAACAGTCCAGA
TTGCCACTCAAATTTTGAGAGTCCAAAAGCTGAAAAACCCAGCTTTCTAGATTCTCAGAAGTTAGCTACCAACCAGCGGA
TTCTCAGAATCTTCCCCAACCTAGGCCTTAGAGGCATCGAGGATGATTGCATTTTGGAGTTGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis