Browse Element(s) Details


Os.11437.1.S1_at

Description gb:AK073110.1
DB_XREF= gi:32983133
TID=Os.11437.1
CNT=43
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.11437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023H22, full insert sequence.
FL= gb:AK073110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5386011/11Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53810OsAffx.22492.1.S1_at1/113+30810964..30817116retrotransposon protein, putative, unclassified
LOC_Os03g53810OsAffx.22492.1.S1_x_at1/113+30810964..30817116retrotransposon protein, putative, unclassified
LOC_Os03g53820Os.31312.5.S1_x_at5/113+30817744..30820999retrotransposon protein, putative, unclassified
LOC_Os03g53820Os.31312.2.S1_x_at4/113+30817744..30820999retrotransposon protein, putative, unclassified
LOC_Os03g53860Os.11437.1.S1_at11/113+30833538..30838364Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53880Os.27760.2.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53880Os.27760.1.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53890Os.10465.1.S1_at11/113+30850479..30852178expressed protein
LOC_Os03g53900Os.15989.1.S1_at11/113+30852224..30853439universal stress protein family protein, expressed
LOC_Os03g53910Os.38031.2.A1_at11/113+30854342..30857514TPR Domain containing protein, expressed
LOC_Os03g53920OsAffx.25707.1.S1_at11/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53920OsAffx.21469.1.S1_at1/113+30861273..30869829Kinesin motor domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11437.1.S1_at--803--8611Chr03:30837816..30837840 (25 bp)
TGGTGGTCGGCGAGCACCCGTACAC
LOC_Os03g53860
Os.11437.1.S1_at--734--5911Chr03:30837827..30837851 (25 bp)
GAGCACCCGTACACGGAGACCAAGG
LOC_Os03g53860
Os.11437.1.S1_at--153--7711Chr03:30837850..30837874 (25 bp)
GGGTGACAGCTTGAACCTGACCATC
LOC_Os03g53860
Os.11437.1.S1_at--41--3371Chr03:30838169..30838193 (25 bp)
CAGCCTAGGACCTACTAGCTAGCTT
LOC_Os03g53860
Os.11437.1.S1_at--713--3711Chr03:30838187..30838211 (25 bp)
CTAGCTTAGCTGCAGTGATAAGGAG
LOC_Os03g53860
Os.11437.1.S1_at--686--2291Chr03:30838237..30838261 (25 bp)
AAATGGGAATTCGTACTCCCTGCCA
LOC_Os03g53860
Os.11437.1.S1_at--759--3151Chr03:30838244..30838268 (25 bp)
AATTCGTACTCCCTGCCATTGTTTC
LOC_Os03g53860
Os.11437.1.S1_at--1059--4431Chr03:30838258..30838282 (25 bp)
GCCATTGTTTCCCTTGATACTATTT
LOC_Os03g53860
Os.11437.1.S1_at--347--10591Chr03:30838283..30838307 (25 bp)
TTCTCTGTTTTGGTGTATGCTCGAT
LOC_Os03g53860
Os.11437.1.S1_at--532--10411Chr03:30838290..30838314 (25 bp)
TTTTGGTGTATGCTCGATCCTCATT
LOC_Os03g53860
Os.11437.1.S1_at--159--9371Chr03:30838303..30838327 (25 bp)
TCGATCCTCATTGGCGAGCATAATG
LOC_Os03g53860
Target Sequence 
TGGTGGTCGGCGAGCACCCGTACACGGAGACCAAGGGTGACAGCTTGAACCTGACCATCCCGGACCCCGGGCCGAGCACG
GTGGCGACGGTATGCGGCGCCGCGCAGTGCGCCACGGTGCTCATCAGCGGCCGGCCGGTGGTGGTGCAGCCGTTCTTGGG
CGCCATGGACGCGCTCGTCGCCGCGTGGCTGCCGGGGACCGAGGGGCAGGGCGTCACCGACGTGCTGTTCGGCGACTACG
GGTTCACCGGCAAGCTGCCGCGGACGTGGTTCAAGTCGGTGGACCAGCTGCCGATGAACTACGGCGACGCGCACTACGAC
CCGCTGTTCCCGCTCGGATTCGGCCTCACCACCCAGCCTAGGACCTACTAGCTAGCTTAGCTGCAGTGATAAGGAGATAT
AGGAAAGATGAAAATTTCACTAAATGGGAATTCGTACTCCCTGCCATTGTTTCCCTTGATACTATTTTTCTCTGTTTTGG
TGTATGCTCGATCCTCATTGGCGAGCATAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis