Browse Element(s) Details


Os.27760.2.S1_at

Description gb:AK111604.1
DB_XREF= gi:37988267
TID=Os.27760.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023067A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098L24, full insert sequence.
FL= gb:AK111604.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5388011/11tousled-like kinase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53810OsAffx.22492.1.S1_at1/113+30810964..30817116retrotransposon protein, putative, unclassified
LOC_Os03g53810OsAffx.22492.1.S1_x_at1/113+30810964..30817116retrotransposon protein, putative, unclassified
LOC_Os03g53820Os.31312.5.S1_x_at5/113+30817744..30820999retrotransposon protein, putative, unclassified
LOC_Os03g53820Os.31312.2.S1_x_at4/113+30817744..30820999retrotransposon protein, putative, unclassified
LOC_Os03g53860Os.11437.1.S1_at11/113+30833538..30838364Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53880Os.27760.2.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53880Os.27760.1.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53890Os.10465.1.S1_at11/113+30850479..30852178expressed protein
LOC_Os03g53900Os.15989.1.S1_at11/113+30852224..30853439universal stress protein family protein, expressed
LOC_Os03g53910Os.38031.2.A1_at11/113+30854342..30857514TPR Domain containing protein, expressed
LOC_Os03g53920OsAffx.25707.1.S1_at11/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53920OsAffx.21469.1.S1_at1/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53930OsAffx.30531.1.S1_x_at2/113+30871401..30871904hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016572biological_processhistone phosphorylation
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27760.2.S1_at--830--9191Chr03:30842718..30842742 (25 bp)
TGCCACCGGAATGCTTTGATCTTAG
LOC_Os03g53880
Os.27760.2.S1_at--936--2371Chr03:30842691..30842715 (25 bp)
AAACGCCATTTATCTCATCGAAGGT
LOC_Os03g53880
Os.27760.2.S1_at--456--6811Chr03:30841354..30841378 (25 bp)
GTTTTACCAAATGCTCTTCGGAAGG
LOC_Os03g53880
Os.27760.2.S1_at--284--5291Chr03:30841334..30841358 (25 bp)
GAAGGCGTCCTTTTGGCCATGACCA
LOC_Os03g53880
Os.27760.2.S1_at--795--6471Chr03:30841284..30841308 (25 bp)
GATACAATCATCAACGCACGCAGAG
LOC_Os03g53880
Os.27760.2.S1_at--526--8212Chr03:30841258..30841282 (25 bp)
GGAATTCCCTTCAAAGCCAGCTGTA
LOC_Os03g53880
Os.27760.2.S1_at--531--2931Chr03:30841036..30841059 (24 bp)
AAGGAACTGATTCGTCGCTGCTTGA
LOC_Os03g53880
Os.27760.2.S1_at--1107--2331Chr03:30840996..30841020 (25 bp)
AAAGACCAGACGTTCTAACCATCGC
LOC_Os03g53880
Os.27760.2.S1_at--972--2631Chr03:30840980..30841004 (25 bp)
AACCATCGCTCAAGAACCTTATCTG
LOC_Os03g53880
Os.27760.2.S1_at--318--3231Chr03:30840916..30840940 (25 bp)
CAAGATTTTGGATCGGCAGCCGCTC
LOC_Os03g53880
Os.27760.2.S1_at--659--2851Chr03:30840743..30840767 (25 bp)
AAGTGAACCTCCTCTTTAATCTAGA
LOC_Os03g53880
Target Sequence 
TGCCACCGGAATGCTTTGATCTTAGCAAAACGCCATTTATCTCATCGAAGGTGGATGTTTGGTCAGCGGGTGTAATGTTT
TACCAAATGCTCTTCGGAAGGCGTCCTTTTGGCCATGACCAGACCCAGGAGAGAATACTTCGGGAAGATACAATCATCAA
CGCACGCAGAGTGGAATTCCCTTCAAAGCCAGCTGTATCAAATGAGGCAAAGGAACTGATTCGTCGCTGCTTGACATACA
ACCAAGCAGAAAGACCAGACGTTCTAACCATCGCTCAAGAACCTTATCTGTCTTATGCAAAGAGGTAGTCACTCCGAAAG
AGTGCAGGACAAGATTTTGGATCGGCAGCCGCTCGCGCAAGAACCCCGGAACATATTTATTTTGGACGGGGATGGGCACC
AGCAAATGGTAAGAATCTGGCAAAGCTCAAGAATATCCCGAAGGGTGTTACTGTATATTTGTAAATATCACTTGTGCCCA
TAACAGCAATGACTAGAACGGCAAGTGAACCTCCTCTTTAATCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27760.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis