Browse Element(s) Details


Os.15989.1.S1_at

Description gb:AK071321.1
DB_XREF= gi:32981344
TID=Os.15989.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.15989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088M23, full insert sequence.
FL= gb:AK071321.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5390011/11universal stress protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53860Os.11437.1.S1_at11/113+30833538..30838364Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53880Os.27760.2.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53880Os.27760.1.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53890Os.10465.1.S1_at11/113+30850479..30852178expressed protein
LOC_Os03g53900Os.15989.1.S1_at11/113+30852224..30853439universal stress protein family protein, expressed
LOC_Os03g53910Os.38031.2.A1_at11/113+30854342..30857514TPR Domain containing protein, expressed
LOC_Os03g53920OsAffx.25707.1.S1_at11/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53920OsAffx.21469.1.S1_at1/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53930OsAffx.30531.1.S1_x_at2/113+30871401..30871904hypothetical protein
LOC_Os03g53939NANA3+30876526..30876679NA
LOC_Os03g53950Os.18627.1.S1_at10/113+30877679..30880133Strictosidine synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15989.1.S1_at--67--2111Chr03:30852730..30852754 (25 bp)
ACATGCTCGTCCTGGGAAGCCGCGG
LOC_Os03g53900
Os.15989.1.S1_at--540--5611Chr03:30852509..30852533 (25 bp)
GACAAGTGAACTCGATCTGCTGCTC
LOC_Os03g53900
Os.15989.1.S1_at--296--9111Chr03:30852481..30852505 (25 bp)
TGCTGCCTGATGGATGTCCTGTGAA
LOC_Os03g53900
Os.15989.1.S1_at--1019--2731Chr03:30852453..30852477 (25 bp)
AAGACTTGGCTATCTTTTGCTACTG
LOC_Os03g53900
Os.15989.1.S1_at--388--8831Chr03:30852430..30852454 (25 bp)
TGATTACTCATGGAGCCGGTGGCTG
LOC_Os03g53900
Os.15989.1.S1_at--892--4251Chr03:30852415..30852439 (25 bp)
CCGGTGGCTGCTGTTATTACTTGTG
LOC_Os03g53900
Os.15989.1.S1_at--103--2711Chr03:30852369..30852393 (25 bp)
AAGCTTCTGAGGCTGGCAGTTCTTA
LOC_Os03g53900
Os.15989.1.S1_at--314--6731Chr03:30852351..30852375 (25 bp)
GTTCTTATGTAGATGCAACGTGCAA
LOC_Os03g53900
Os.15989.1.S1_at--375--5531Chr03:30852323..30852347 (25 bp)
GAAACTAATACATGGAACTGCCGTT
LOC_Os03g53900
Os.15989.1.S1_at--546--5471Chr03:30852309..30852333 (25 bp)
GAACTGCCGTTGAAGCTTCTGAGCT
LOC_Os03g53900
Os.15989.1.S1_at--491--3651Chr03:30852294..30852318 (25 bp)
CTTCTGAGCTCCTGTGTAGATGTAA
LOC_Os03g53900
Target Sequence 
ACATGCTCGTCCTGGGAAGCCGCGGCCTAGGCAAGATCAAGAGGGCGTTCTTGGGCAGCGTCAGCGACTACCTCGTCCAT
CACGCGTGCTGCCCCGTGCTGGTCGTGAAGCCCACCAAGGCGCACGACAAGTGAACTCGATCTGCTGCTCCTTTGCTGCC
TGATGGATGTCCTGTGAAGTGAAGACTTGGCTATCTTTTGCTACTGATTACTCATGGAGCCGGTGGCTGCTGTTATTACT
TGTGTTGAAAATAAAAGGATATGTTAAGCTTCTGAGGCTGGCAGTTCTTATGTAGATGCAACGTGCAAACTGAAACTAAT
ACATGGAACTGCCGTTGAAGCTTCTGAGCTCCTGTGTAGATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis