Browse Element(s) Details


Os.14500.1.S1_at

Description gb:AK061386.1
DB_XREF= gi:32971404
TID=Os.14500.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023128E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-A06, full insert sequence.
FL= gb:AK061386.1 gb:AK072597.1 gb:AK066914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5396011/11transcriptional adaptor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53920OsAffx.25707.1.S1_at11/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53920OsAffx.21469.1.S1_at1/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53930OsAffx.30531.1.S1_x_at2/113+30871401..30871904hypothetical protein
LOC_Os03g53939NANA3+30876526..30876679NA
LOC_Os03g53950Os.18627.1.S1_at10/113+30877679..30880133Strictosidine synthase family protein, expressed
LOC_Os03g53960Os.14500.1.S2_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53960Os.14500.1.S1_at11/113+30886007..30893399transcriptional adaptor, putative, expressed
LOC_Os03g53970OsAffx.13484.1.S1_at10/113+30894059..30896475expressed protein
LOC_Os03g53980Os.22981.1.S1_at10/113+30900124..30901173expressed protein
LOC_Os03g53990OsAffx.25709.1.S1_at11/113+30904911..30909769expressed protein
LOC_Os03g54000Os.4978.1.S1_at11/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54000Os.4978.1.S2_at10/113+30910024..30914143oligopeptide transporter 3, putative, expressed
LOC_Os03g54010OsAffx.3605.1.S1_at11/113+30915505..30916265hypothetical protein
LOC_Os03g54020Os.14491.2.S1_x_at3/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020Os.47463.1.S1_x_at2/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020OsAffx.8135.1.S1_at1/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009631biological_processcold acclimation
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0042127biological_processregulation of cell proliferation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14500.1.S1_at--1018--4671Chr03:30892274..30892298 (25 bp)
GCGGAGCATGTTGGCACCAAGACCA
LOC_Os03g53960
Os.14500.1.S1_at--236--2551Chr03:30892224..30892248 (25 bp)
AACTGCATACATGAACTCACCTTGT
LOC_Os03g53960
Os.14500.1.S1_at--88--4191Chr03:30892098..30892219 (25 bp)
CCCTTCCGGATATGTCTCATGTTAA
LOC_Os03g53960
Os.14500.1.S1_at--98--5311Chr03:30892061..30892085 (25 bp)
GAAGGAATTGCTTGCTATGGCTAAA
LOC_Os03g53960
Os.14500.1.S1_at--820--7931Chr03:30889507..30889531 (25 bp)
GGATTTGACCCCTAAGGACGAGTCT
LOC_Os03g53960
Os.14500.1.S1_at--954--9771Chr03:30889495..30889519 (25 bp)
TAAGGACGAGTCTCCATTTTCTCCC
LOC_Os03g53960
Os.14500.1.S1_at--997--1011Chr03:30889357..30889381 (25 bp)
AGGTTTAGCTGGTCGATCACCTTCA
LOC_Os03g53960
Os.14500.1.S1_at--850--2411Chr03:30888625..30888649 (25 bp)
AAAAACCCCGATATTCTGCAGATGA
LOC_Os03g53960
Os.14500.1.S1_at--344--5311Chr03:30888602..30888626 (25 bp)
GAAGGGCCTTCTTTGACTGAACTGA
LOC_Os03g53960
Os.14500.1.S1_at--362--5991Chr03:30888561..30888585 (25 bp)
GAGACATGAATTTGACCCAGAGTAT
LOC_Os03g53960
Os.14500.1.S1_at--650--611Chr03:30888529..30888553 (25 bp)
ATGCTGAACAGGCACTCGCTGAGAT
LOC_Os03g53960
Target Sequence 
GCGGAGCATGTTGGCACCAAGACCAAGGCACAATGCATTGATCATTATACAACTGCATACATGAACTCACCTTGTTATCC
CCTTCCGGATATGTCTCATGTTAACGGTAAGAACAGGAAGGAATTGCTTGCTATGGCTAAAGTACAAGGCGAGAGTAAAA
AAGGAACTTCAGTGTTACCAGGGGATTTGACCCCTAAGGACGAGTCTCCATTTTCTCCCCCAAGGGTCAAGGTGGAAGAT
GCACTTGGAGAAGGTTTAGCTGGTCGATCACCTTCACACATAGCTGGGGGTGCAAATAAGAAAGCATCAAATGTTGGACA
ATTCAAAGATGGTGCTAATGTAGCAAAAGTTGAAGATGGTCATGTGGATAGAAGTATAGGTGTGAAAAAACCCCGATATT
CTGCAGATGAAGGGCCTTCTTTGACTGAACTGAGTGGATACAATTCAAAGAGACATGAATTTGACCCAGAGTATGATAAC
GATGCTGAACAGGCACTCGCTGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis