Browse Element(s) Details


OsAffx.8135.1.S1_at

Description gb:NM_196450.1
DB_XREF= gi:37534259
TID=OsAffx.8135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0015J03.6), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2702011/11transposon protein, putative, Pong sub-class
LOC_Os03g540201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g073301/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26980NANA10+13894568..13894951hypothetical protein
LOC_Os10g26990Os.27689.1.S1_at11/1110+13896705..13900487Kelch motif family protein, expressed
LOC_Os10g27000NANA10+13905955..13906224hypothetical protein
LOC_Os10g27010OsAffx.8136.1.S1_at11/1110+13906834..13908150transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27020OsAffx.8135.1.S1_at11/1110+13908706..13909849transposon protein, putative, Pong sub-class
LOC_Os10g27030NANA10+13910556..13913442Transposable element protein, putative, Transposase_28
LOC_Os10g27040Os.45212.1.S1_x_at11/1110+13914797..13920843retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g27050Os.56095.1.S1_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.2.A1_x_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.1.A1_at10/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27228.2.S1_at1/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27060Os.18180.1.S1_a_at11/1110+13929788..13932440SET domain protein 123, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8135.1.S1_at--77--6271Chr10:13909324..13909348 (25 bp)
GATGTGTTCAACACCAGCGCGCCAA
LOC_Os10g27020
OsAffx.8135.1.S1_at--252--3391Chr10:13909310..13909334 (25 bp)
CAGCGCGCCAACAAATGGACACAAG
LOC_Os10g27020
OsAffx.8135.1.S1_at--877--2691Chr10:13909203..13909227 (25 bp)
AAGCTACCTGGAAGAGTGGGCAATC
LOC_Os10g27020
OsAffx.8135.1.S1_at--923--8951Chr10:13909175..13909199 (25 bp)
TGACATGGTCATGAACTCAGCCCAT
LOC_Os10g27020
OsAffx.8135.1.S1_at--530--5471Chr10:13909163..13909187 (25 bp)
GAACTCAGCCCATGCGATATTCGAA
LOC_Os10g27020
OsAffx.8135.1.S1_at--632--5591Chr10:13909126..13909150 (25 bp)
GACAAACCTTTCACCTTGGAGTACA
LOC_Os10g27020
OsAffx.8135.1.S1_at--863--6151Chr10:13909093..13909117 (25 bp)
GAGGTCAAGGATTTGCCTAAATGGT
LOC_Os10g27020
OsAffx.8135.1.S1_at--1066--2771Chr10:13908965..13908989 (25 bp)
AAGAGAAGCGCCCTGATGGACAGAA
LOC_Os10g27020
OsAffx.8135.1.S1_at--961--9034Chr10:13908901..13908925 (25 bp)
TGCACCATCTCCTTTGGGCAACCAA
LOC_Os10g27020
OsAffx.8135.1.S1_at--1055--7591Chr10:13908886..13908910 (25 bp)
GGGCAACCAACCAAGTCAGAATATG
LOC_Os10g27020
OsAffx.8135.1.S1_at--426--8991Chr10:13908748..13908772 (25 bp)
TGAAGCACACCACAAGAGGCATGAA
LOC_Os10g27020
Target Sequence 
GATGTGTTCAACACCAGCGCGCCAACAAATGGACACAAGAGGTCAGTCAAGCAACTGAAGACACATTGGGGTGATGTGAA
GAGAGATATAACAAAGTTCTGTGGAGTATATGGTAGACTTAAAGCTACCTGGAAGAGTGGGCAATCTGATGACATGGTCA
TGAACTCAGCCCATGCGATATTCGAAAAAGAAAACAAGGACAAACCTTTCACCTTGGAGTACATGTGGAGAGAGGTCAAG
GATTTGCCTAAATGGTGTAGAATAGTCCAAGAGGATAGTGGAAATAAGAGGACCAAGGAGGAAACCATTAGCAAAGAGAA
GCGCCCTGATGGACAGAAGAAAGCAAAGGCCGGGCTAAAAGGAAAAGGAAAAGATGCTGCACCATCTCCTTTGGGCAACC
AACCAAGTCAGAATATGATTCTATATCATGAAGCTATGTCACTTAAAGCAACAGCAATGATAAAATCAGCAAAAGAGAAG
AAGTACCAGACTTACTTAAAACTGTTGGAGAAAGATACTTCAAACTTCAGTGAAGCACACCACAAGAGGCATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis