Browse Element(s) Details


Os.27689.1.S1_at

Description gb:AK068671.1
DB_XREF= gi:32978688
TID=Os.27689.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0015J03.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158J20, full insert sequence.
FL= gb:AK068671.1 gb:AK058303.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2699011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26980NANA10+13894568..13894951hypothetical protein
LOC_Os10g26990Os.27689.1.S1_at11/1110+13896705..13900487Kelch motif family protein, expressed
LOC_Os10g27000NANA10+13905955..13906224hypothetical protein
LOC_Os10g27010OsAffx.8136.1.S1_at11/1110+13906834..13908150transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27020OsAffx.8135.1.S1_at11/1110+13908706..13909849transposon protein, putative, Pong sub-class
LOC_Os10g27030NANA10+13910556..13913442Transposable element protein, putative, Transposase_28
LOC_Os10g27040Os.45212.1.S1_x_at11/1110+13914797..13920843retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g27050Os.56095.1.S1_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.2.A1_x_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.1.A1_at10/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27228.2.S1_at1/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27689.1.S1_at--896--5591Chr10:13897274..13897298 (25 bp)
GAAATTGTGGCAGAAGAAGCTCATT
LOC_Os10g26990
Os.27689.1.S1_at--312--2691Chr10:13897258..13897282 (25 bp)
AAGCTCATTGCCCAAACAGATCTTT
LOC_Os10g26990
Os.27689.1.S1_at--332--3331Chr10:13897034..13897058 (25 bp)
CACTGTCACTGATCACTGTACTTAT
LOC_Os10g26990
Os.27689.1.S1_at--438--451Chr10:13897011..13897035 (25 bp)
ATCTATGTTGTATCATGCCCTCTTG
LOC_Os10g26990
Os.27689.1.S1_at--401--9171Chr10:13896996..13897020 (25 bp)
TGCCCTCTTGGCATACTGCTTAGTG
LOC_Os10g26990
Os.27689.1.S1_at--940--4891Chr10:13896979..13897003 (25 bp)
GCTTAGTGTGCTTAATGTTGGCTCT
LOC_Os10g26990
Os.27689.1.S1_at--396--6591Chr10:13896963..13896987 (25 bp)
GTTGGCTCTATGTTGTAGCGGCAGA
LOC_Os10g26990
Os.27689.1.S1_at--1051--10791Chr10:13896951..13896975 (25 bp)
TTGTAGCGGCAGATTAGACTTGAGA
LOC_Os10g26990
Os.27689.1.S1_at--571--2651Chr10:13896913..13896937 (25 bp)
AAGCCTATTGGTTACTGTACTTGAA
LOC_Os10g26990
Os.27689.1.S1_at--318--10171Chr10:13896871..13896895 (25 bp)
TATCATGTGCTGTAAATCTTCGTAA
LOC_Os10g26990
Os.27689.1.S1_at--154--3271Chr10:13896837..13896861 (25 bp)
CAACTCTCCAAGCATTTCATTGCAC
LOC_Os10g26990
Target Sequence 
GAAATTGTGGCAGAAGAAGCTCATTGCCCAAACAGATCTTTGTTCATTANATTACCAGAAAACACCAATTCAGTATTCTG
GAAATTTGAAGCTACTCATNAGGTAGGAGATGGATGCCGAAAANTTTNTGTGCAAACTGGAAACTGAGAAGAGAACTTCC
TTAATAGTNGCGGTGATAGGNGGGGAGAATATGCATNNGTGGATANCATTTCACTAAGTTGGAATATCCANCTTCAGCCT
CTCACTGTCACTGATCACTGTACTTATCTATGTTGTATCATGCCCTCTTGGCATACTGCTTAGTGTGCTTAATGTTGGCT
CTATGTTGTAGCGGCAGATTAGACTTGAGANTAGAGAAGTAATAAGCCTATTGGTTACTGTACTTGAAAAATCCGTATGT
NNTGGTATCATGTGCTGTAAATCTTCGTAATTACCCCTCCAACTCTCCAAGCATTTCATTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis