Browse Element(s) Details


OsAffx.8136.1.S1_at

Description gb:NM_196449.1
DB_XREF= gi:37534257
TID=OsAffx.8136.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015J03.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2701011/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26980NANA10+13894568..13894951hypothetical protein
LOC_Os10g26990Os.27689.1.S1_at11/1110+13896705..13900487Kelch motif family protein, expressed
LOC_Os10g27000NANA10+13905955..13906224hypothetical protein
LOC_Os10g27010OsAffx.8136.1.S1_at11/1110+13906834..13908150transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27020OsAffx.8135.1.S1_at11/1110+13908706..13909849transposon protein, putative, Pong sub-class
LOC_Os10g27030NANA10+13910556..13913442Transposable element protein, putative, Transposase_28
LOC_Os10g27040Os.45212.1.S1_x_at11/1110+13914797..13920843retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g27050Os.56095.1.S1_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.2.A1_x_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.1.A1_at10/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27228.2.S1_at1/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27060Os.18180.1.S1_a_at11/1110+13929788..13932440SET domain protein 123, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8136.1.S1_at--1114--2691Chr10:13907834..13907858 (25 bp)
AAGCTCTAGGTGTCTGGTCTCCATA
LOC_Os10g27010
OsAffx.8136.1.S1_at--772--7151Chr10:13907818..13907842 (25 bp)
GTCTCCATATTTTTGTCTACGGCGA
LOC_Os10g27010
OsAffx.8136.1.S1_at--259--5571Chr10:13907357..13907378 (22 bp)
GAAAGTCACCATTGTTCACCGAACA
LOC_Os10g27010
OsAffx.8136.1.S1_at--468--3351Chr10:13907318..13907342 (25 bp)
CACCCGCCATTCAGTTCAGTATTAA
LOC_Os10g27010
OsAffx.8136.1.S1_at--742--5751Chr10:13907259..13907283 (25 bp)
GACGGTTTATATCCAGACTGGGCCA
LOC_Os10g27010
OsAffx.8136.1.S1_at--1139--2271Chr10:13907127..13907151 (25 bp)
AAATGTTGGGCCATCGTACGTCACC
LOC_Os10g27010
OsAffx.8136.1.S1_at--976--6011Chr10:13907020..13907044 (25 bp)
GAGAGGCATCTACGACATACCCGAT
LOC_Os10g27010
OsAffx.8136.1.S1_at--581--671Chr10:13906985..13907009 (25 bp)
ATGAACAAGGACATTCCCCGCATTT
LOC_Os10g27010
OsAffx.8136.1.S1_at--25--8531Chr10:13906945..13906969 (25 bp)
TGGACCAGTCCATGGATTCTCAGAG
LOC_Os10g27010
OsAffx.8136.1.S1_at--880--8131Chr10:13906903..13906927 (25 bp)
GGAAATTCGTGATCAACAAGCCCAT
LOC_Os10g27010
OsAffx.8136.1.S1_at--683--2211Chr10:13906888..13906912 (25 bp)
ACAAGCCCATCGTCGTCTGAAGGAA
LOC_Os10g27010
Target Sequence 
AAGCTCTAGGTGTCTGGTCTCCATATTTTTGTCTACGGCGAGATGCATTTGGAAAGTCACCATTGTTCACCGAACAGCTA
CAAGGCAGAGCACCCGCCATTCAGTTCAGTATTAATGGGACACAATACAATATGGGATACTATCTAGCTGACGGTTTATA
TCCAGACTGGGCCACATTTGTCAAAACAATCAACAGACCTCTAAGTGCTAAGCATAAATTGTTTGCAGCTCATCAAGAAG
GAGCAAGAAAAGATGTGGAACGAGCTTTCGGGGTTTTGCAAAAATGTTGGGCCATCGTACGTCACCCAGCACGGCTATGG
GAATGGGAACAACTTGCAGATATCATGTATGCATGTGTTATTTTGCACAACATGATAGTAGAGAATGAGAGAGGCATCTA
CGACATACCCGATGACAACACATATGAACAAGGACATTCCCCGCATTTAACAGGACTTGATCATGGACCAGTCCATGGAT
TCTCAGAGGTCCTAGAAAAAGATATGGAAATTCGTGATCAACAAGCCCATCGTCGTCTGAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis