Browse Element(s) Details


Os.18180.1.S1_a_at

Description gb:AK111981.1
DB_XREF= gi:37988644
TID=Os.18180.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18180 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0015J03.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-E07, full insert sequence.
FL= gb:AK111906.1 gb:AK111981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2706011/11SET domain protein 123, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27000NANA10+13905955..13906224hypothetical protein
LOC_Os10g27010OsAffx.8136.1.S1_at11/1110+13906834..13908150transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27020OsAffx.8135.1.S1_at11/1110+13908706..13909849transposon protein, putative, Pong sub-class
LOC_Os10g27030NANA10+13910556..13913442Transposable element protein, putative, Transposase_28
LOC_Os10g27040Os.45212.1.S1_x_at11/1110+13914797..13920843retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g27050Os.56095.1.S1_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.2.A1_x_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.1.A1_at10/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27228.2.S1_at1/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27060Os.18180.1.S1_a_at11/1110+13929788..13932440SET domain protein 123, putative, expressed
LOC_Os10g27070OsAffx.30558.1.S1_at11/1110+13938898..13939601hypothetical protein
LOC_Os10g27080NANA10+13940075..13941192hypothetical protein
LOC_Os10g27090OsAffx.20353.1.S1_at11/1110+13942064..13948943hypothetical protein
LOC_Os10g27100Os.49882.1.S1_at4/1110+13951527..13956264hypothetical protein
LOC_Os10g27100Os.41695.4.S1_x_at1/1110+13951527..13956264hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18180.1.S1_a_at--888--5951Chr10:13930872..13930896 (25 bp)
GAGAACCTTCTATCCTCAGCAGTAG
LOC_Os10g27060
Os.18180.1.S1_a_at--36--9671Chr10:13930857..13930881 (25 bp)
TCAGCAGTAGCCTCAGTATCTTGTG
LOC_Os10g27060
Os.18180.1.S1_a_at--261--8231Chr10:13930821..13930845 (25 bp)
GGCAATGCTGTCTATATGCTTCCCT
LOC_Os10g27060
Os.18180.1.S1_a_at--692--10651Chr10:13930802..13930826 (25 bp)
TTCCCTCTTTCTATAACCATGACTG
LOC_Os10g27060
Os.18180.1.S1_a_at--133--9911Chr10:13930376..13930400 (25 bp)
TACTCACATAGTTTGGTTGGCCAGC
LOC_Os10g27060
Os.18180.1.S1_a_at--770--6611Chr10:13930361..13930385 (25 bp)
GTTGGCCAGCGCAGACGCGAGATTA
LOC_Os10g27060
Os.18180.1.S1_a_at--1058--2931Chr10:13930336..13930360 (25 bp)
AAGGCCCTCCGCAACATCGAAGAAG
LOC_Os10g27060
Os.18180.1.S1_a_at--248--2771Chr10:13930174..13930198 (25 bp)
AAGAGCTGCGCATCTGCTACATTGA
LOC_Os10g27060
Os.18180.1.S1_a_at--374--7111Chr10:13930126..13930150 (25 bp)
GTCAGAGGATTCTCGCCGAAGGATT
LOC_Os10g27060
Os.18180.1.S1_a_at--883--991Chr10:13930107..13930131 (25 bp)
AGGATTTGGCTTCGAATGCCGCTGC
LOC_Os10g27060
Os.18180.1.S1_a_at--897--3811Chr10:13930086..13930110 (25 bp)
CTGCCAACGGTGCTTGTCTGGAGAT
LOC_Os10g27060
Target Sequence 
GAGAACCTTCTATCCTCAGCAGTAGCCTCAGTATCTTGTGATGCGGCAGTTGGCAATGCTGTCTATATGCTTCCCTCTTT
CTATAACCATGACTGTGATCCAAATACTCACATAGTTTGGTTGGCCAGCGCAGACGCGAGATTAAAGGCCCTCCGCAACA
TCGAAGAAGGTGAAGAGCTGCGCATCTGCTACATTGACGCGAGCATGGACGTCGATGCCCGTCAGAGGATTCTCGCCGAA
GGATTTGGCTTCGAATGCCGCTGCCAACGGTGCTTGTCTGGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18180.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis