Browse Element(s) Details


OsAffx.20353.1.S1_at

Description tigr:9638.m02320
TID=OsAffx.20353.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F23M19.3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2709011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27040Os.45212.1.S1_x_at11/1110+13914797..13920843retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g27050Os.56095.1.S1_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.2.A1_x_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.1.A1_at10/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27228.2.S1_at1/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27060Os.18180.1.S1_a_at11/1110+13929788..13932440SET domain protein 123, putative, expressed
LOC_Os10g27070OsAffx.30558.1.S1_at11/1110+13938898..13939601hypothetical protein
LOC_Os10g27080NANA10+13940075..13941192hypothetical protein
LOC_Os10g27090OsAffx.20353.1.S1_at11/1110+13942064..13948943hypothetical protein
LOC_Os10g27100Os.49882.1.S1_at4/1110+13951527..13956264hypothetical protein
LOC_Os10g27100Os.41695.4.S1_x_at1/1110+13951527..13956264hypothetical protein
LOC_Os10g27110Os.5836.1.A1_at11/1110+13957562..13959698Lipase, putative, expressed
LOC_Os10g27110Os.5836.1.A1_x_at11/1110+13957562..13959698Lipase, putative, expressed
LOC_Os10g27120OsAffx.6780.1.S1_x_at11/1110+13961465..13962226lipase, putative, expressed
LOC_Os10g27140Os.26886.1.S1_x_at11/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27140Os.26886.3.S1_x_at7/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27140OsAffx.16244.1.S1_x_at1/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20353.1.S1_at--478--5551Chr10:13945892..13945916 (25 bp)
GAAACGTTAGGTTCCACTGGACTTG
LOC_Os10g27090
OsAffx.20353.1.S1_at--72--8291Chr10:13946099..13946123 (25 bp)
GGCATTGGCCTTTGAGAAAACCGAT
LOC_Os10g27090
OsAffx.20353.1.S1_at--700--2391Chr10:13946115..13946139 (25 bp)
AAAACCGATCCCTCAGTCTTGAAGT
LOC_Os10g27090
OsAffx.20353.1.S1_at--1016--4911Chr10:13946177..13946201 (25 bp)
GCTTCCTCCTTGCATCAAATTAGTA
LOC_Os10g27090
OsAffx.20353.1.S1_at--1034--6651Chr10:13946213..13946237 (25 bp)
GTTGAAGCCGTTTTTGTCCATAGAT
LOC_Os10g27090
OsAffx.20353.1.S1_at--1027--7271Chr10:13946384..13946408 (25 bp)
GTGCCAATTGCTGAATCCACAAGGT
LOC_Os10g27090
OsAffx.20353.1.S1_at--145--7772Chr10:13948510..13948534 (25 bp)
GGTGAGTGCATAGCCTTAACATCAT
LOC_Os10g27090
OsAffx.20353.1.S1_at--835--412Chr10:13948530..13948554 (25 bp)
ATCATGTCCATGTCCTGTCGAATAT
LOC_Os10g27090
OsAffx.20353.1.S1_at--681--351Chr10:13948607..13948714 (25 bp)
ATAAGAGTCTTTCCGCCATGAATGC
LOC_Os10g27090
OsAffx.20353.1.S1_at--562--4151Chr10:13948736..13948760 (25 bp)
CCCAATCCCTGTTCAATTCATAGAG
LOC_Os10g27090
OsAffx.20353.1.S1_at--221--1291Chr10:13948759..13948879 (25 bp)
AGATCTGTAAAGTTGCCGCTAGCTG
LOC_Os10g27090
Target Sequence 
GAAACGTTAGGTTCCACTGGACTTGCCTTGCAATATTCAAAAGTTATTTTGCAGATAAATAAACTGGCATTGGCCTTTGA
GAAAACCGATCCCTCAGTCTTGAAGTCTGTTCCTAAGGAAGCTAAAGATGCATTATACCAAATGCTTCCTCCTTGCATCA
AATTAGTATTTTATAGAAAGTTGAAGCCGTTTTTGTCCATAGATAAGACATCTGAAGAAGAGGTCAGAGCTGAAATGAAT
AGAATGTTGCAATGGCTTGTGCCAATTGCTGAATCCACAAGGTCAGACCAGACATCAGTGCATGAGAATAGTGTTAAGAA
CCAGTTCGATTTGGGTGAGTGCATAGCCTTAACATCATGTCCATGTCCTGTCGAATATATTCTTTGTGAGTCAAAACGTG
AGGGAAAGGCCGCTATATTAGGCAAAACAAATAAGAGTCTTTCCGCCATGAATGCCCCCTATATCAGACCTGAGTACCCA
ATCCCTGTTCAATTCATAGAGATCTGTAAAGTTGCCGCTAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis