Browse Element(s) Details


OsAffx.6780.1.S1_x_at

Description tigr:9638.m02323
TID=OsAffx.6780.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2712011/11lipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27070OsAffx.30558.1.S1_at11/1110+13938898..13939601hypothetical protein
LOC_Os10g27080NANA10+13940075..13941192hypothetical protein
LOC_Os10g27090OsAffx.20353.1.S1_at11/1110+13942064..13948943hypothetical protein
LOC_Os10g27100Os.49882.1.S1_at4/1110+13951527..13956264hypothetical protein
LOC_Os10g27100Os.41695.4.S1_x_at1/1110+13951527..13956264hypothetical protein
LOC_Os10g27110Os.5836.1.A1_at11/1110+13957562..13959698Lipase, putative, expressed
LOC_Os10g27110Os.5836.1.A1_x_at11/1110+13957562..13959698Lipase, putative, expressed
LOC_Os10g27120OsAffx.6780.1.S1_x_at11/1110+13961465..13962226lipase, putative, expressed
LOC_Os10g27140Os.26886.1.S1_x_at11/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27140Os.26886.3.S1_x_at7/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27140OsAffx.16244.1.S1_x_at1/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27150NANA10+13976237..13977918transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27160NANA10+13981717..13982121hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6780.1.S1_x_at--689--4571Chr10:13962130..13962154 (25 bp)
GCGCGGCGGAAGACCGGCCTGCACG
LOC_Os10g27120
OsAffx.6780.1.S1_x_at--30--3351Chr10:13961836..13961959 (25 bp)
CACCCGCGCAACGTGGCGTCGTCGG
LOC_Os10g27120
OsAffx.6780.1.S1_x_at--621--3931Chr10:13961814..13961838 (25 bp)
CGGCGCAGTACATCCTCGAGCAGTT
LOC_Os10g27120
OsAffx.6780.1.S1_x_at--589--9871Chr10:13961806..13961830 (25 bp)
TACATCCTCGAGCAGTTCCGGGCGA
LOC_Os10g27120
OsAffx.6780.1.S1_x_at--175--571Chr10:13961803..13961827 (25 bp)
ATCCTCGAGCAGTTCCGGGCGACGA
LOC_Os10g27120
OsAffx.6780.1.S1_x_at--725--6131Chr10:13961729..13961753 (25 bp)
GAGGGTGCGGATGGCCATGGCGCCG
LOC_Os10g27120
OsAffx.6780.1.S1_x_at--611--9071Chr10:13961650..13961674 (25 bp)
TGCTTCGTAGTGTGGCAGCTCGTGC
LOC_Os10g27120
OsAffx.6780.1.S1_x_at--453--10071Chr10:13961643..13961667 (25 bp)
TAGTGTGGCAGCTCGTGCCGGACAT
LOC_Os10g27120
OsAffx.6780.1.S1_x_at--397--1591Chr10:13961634..13961658 (25 bp)
AGCTCGTGCCGGACATGTGGCTCGT
LOC_Os10g27120
OsAffx.6780.1.S1_x_at--72--9191Chr10:13961628..13961652 (25 bp)
TGCCGGACATGTGGCTCGTCGAGAT
LOC_Os10g27120
OsAffx.6780.1.S1_x_at--711--8352Chr08:24861645..24862051 (25 bp)
GGCGGCGCGAGACCTCTCCGGCGAG
NONE
Target Sequence 
GCGCGGCGGAAGACCGGCCTGCACGCGGCGCTCCACCGCTGGGCGCGGGCGCGCATCCCGCTCCGGTTTCTTTCCGGTGG
GGGAGGTGGCGGAGGCGTGGGCGGCGGCGGCGGAGGCGGACGCCCCTCCCCCGACCTCCGCGTGCTCCTCTCCGTCCTCG
CCTGCCCGCTCTCCCCCGTCCCCGTCCTCCCGCGCCACCCGCGCAACGTGGCGTCGTCGGCGCAGTACATCCTCGAGCAG
TTCCGGGCGACGACGGGGTGCGCCAAGATCGAGGGCGCGGCGAAGAGCATGTACGCGGCGGGGAGGGTGCGGATGGCCAT
GGCGCCGGAGCCCGGCGGCGGCATCGGCATCGGCGGCGGCGGCGGAGGCGGGCACGAGGGGTGCTTCGTAGTGTGGCAGC
TCGTGCCGGACATGTGGCTCGTCGAGATGGCCGTGGCCGGGCACGCCGTCGCCGCCGGCTGCGACGGCCGCGTCGCGTGG
CGCCGCACGCCCTGGCTCGACGCCCACGCCGCGCGCGGCGGCGGCGCGAGACCTCTCCGGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6780.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis