Browse Element(s) Details


Os.49882.1.S1_at

Description gb:AK119279.1
DB_XREF= gi:37988902
TID=Os.49882.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49882 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-B12, full insert sequence.
FL= gb:AK119279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g271004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27050Os.56095.1.S1_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.2.A1_x_at11/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27801.1.A1_at10/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27050Os.27228.2.S1_at1/1110+13924340..13929419Serine/threonine protein phosphatase PP2A-4 catalytic subunit, putative, expressed
LOC_Os10g27060Os.18180.1.S1_a_at11/1110+13929788..13932440SET domain protein 123, putative, expressed
LOC_Os10g27070OsAffx.30558.1.S1_at11/1110+13938898..13939601hypothetical protein
LOC_Os10g27080NANA10+13940075..13941192hypothetical protein
LOC_Os10g27090OsAffx.20353.1.S1_at11/1110+13942064..13948943hypothetical protein
LOC_Os10g27100Os.49882.1.S1_at4/1110+13951527..13956264hypothetical protein
LOC_Os10g27100Os.41695.4.S1_x_at1/1110+13951527..13956264hypothetical protein
LOC_Os10g27110Os.5836.1.A1_at11/1110+13957562..13959698Lipase, putative, expressed
LOC_Os10g27110Os.5836.1.A1_x_at11/1110+13957562..13959698Lipase, putative, expressed
LOC_Os10g27120OsAffx.6780.1.S1_x_at11/1110+13961465..13962226lipase, putative, expressed
LOC_Os10g27140Os.26886.1.S1_x_at11/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27140Os.26886.3.S1_x_at7/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27140OsAffx.16244.1.S1_x_at1/1110+13970317..13973666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27150NANA10+13976237..13977918transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49882.1.S1_at--812--9831Chr10:13951293..13951317 (25 bp)
TAAACTGCAGTTGGTCTAGGACCTC
NONE
Os.49882.1.S1_at--1133--8091Chr10:13951311..13951335 (25 bp)
GGACCTCTAGGTGACTGACAAATAA
NONE
Os.49882.1.S1_at--543--5231Chr10:13951377..13951401 (25 bp)
GAATAACAGTTCTTCCACGGCATTC
NONE
Os.49882.1.S1_at--136--8291Chr10:13951395..13951419 (25 bp)
GGCATTCCAACTTCCTATTAGGCAT
NONE
Os.49882.1.S1_at--1087--1071Chr10:13951465..13951489 (25 bp)
AGGGCAGATATAGCTTGTCCAACAT
NONE
Os.49882.1.S1_at--885--8691Chr10:13951480..13951504 (25 bp)
TGTCCAACATCCCTTCATTATTTTG
NONE
Os.49882.1.S1_at--1130--571Chr10:13951527..13951551 (25 bp)
ATGCCGACGACGTGCAAGACTTTCA
NONE
Os.49882.1.S1_at--602--8131Chr10:13951638..13951662 (25 bp)
GGACAGGCAGCCACATTTTGTGCTT
LOC_Os10g27100
Os.49882.1.S1_at--699--7351Chr10:13951664..13951688 (25 bp)
GTGAAGGCTCTTCATCAGCTGGTTT
LOC_Os10g27100
Os.49882.1.S1_at--188--9053Chr10:13951794..13951818 (25 bp)
TGCAGACTAGTTGATATCCCGCGCT
LOC_Os10g27100
Os.49882.1.S1_at--696--9291Chr10:13951810..13951834 (25 bp)
TCCCGCGCTTTGCTACGAAATATGT
LOC_Os10g27100
Target Sequence 
TAAACTGCAGTTGGTCTAGGACCTCTAGGTGACTGACAAATAAGAAATTTCCTGGCAACTGATAAATAGCAAAACAAAAA
AAAGGAATAACAGTTCTTCCACGGCATTCCAACTTCCTATTAGGCATGAAAACTGAATAGAGTTTAGACTATGCAAAATA
CATGCAAGACAAAGGGCAGATATAGCTTGTCCAACATCCCTTCATTATTTTGTTTCTTTGGACCAGGATGGAGGATGCCG
ACGACGTGCAAGACTTTCACTGCAATATTATCAGAAGCCGATCGAATAATTCTGCAGATTCCAGGGTGAGCAAGATAGAG
ACATTGTTCTATGCCAACAAGGAGAGGACAGGCAGCCACATTTTGTGCTTGGTGAAGGCTCTTCATCAGCTGGTTTGCTA
TGAGAGAGAGGCAGCTGGCCAACATGAGGCTGGATATTGAACTGCACCGGCCACGGGCTTTCCGGACCAGGCCTAGCTAG
TTAGCATGTCTGAGCCATATATGCAGACTAGTTGATATCCCGCGCTTTGCTACGAAATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49882.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis